View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_low_35 (Length: 218)
Name: NF15279_low_35
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_low_35 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 52184166 - 52183949
Alignment:
| Q |
1 |
aagtaatcacaaacactgtctatataagaaaatcactggctcttctaccttcttaagcatgcatgccatgacaccaattggtaatagttaacaatcaagt |
100 |
Q |
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| T |
52184166 |
aagtaatcacaaacactgtctatataagaaaatcactggctcttctaccttcttaagcatgcatgccatgacaccaattggtaatagttaacaatcaagt |
52184067 |
T |
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| Q |
101 |
gacattcttctaagatgtacattcagaaaaagtctgaagatccatttttagtaaaatagtagattttagagctttgtaaatattgtgtacatcaatcaaa |
200 |
Q |
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| T |
52184066 |
gacattcttctaagatgtacattcagaaaaagtctgaagatccatttttagtaaaatagtagattttagagctttgtaaatattgtgtacatcaatcaaa |
52183967 |
T |
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| Q |
201 |
agctagatatatatgcct |
218 |
Q |
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|||||||||||||||||| |
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| T |
52183966 |
agctagatatatatgcct |
52183949 |
T |
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Target: scaffold0001 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 42 - 218
Target Start/End: Complemental strand, 64974 - 64796
Alignment:
| Q |
42 |
cttctaccttcttaagcatgcatgc--------catgacaccaattggtaatagttaacaatcaagtgacattcttctaagatgtacattcagaaaaagt |
133 |
Q |
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| T |
64974 |
cttctaccttcttaagcatgcatgcatctctcccatcacaccaatcggtaatagttaacaatcaagtgacattctt---agatgtacattcagaaaaagt |
64878 |
T |
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| Q |
134 |
ctgaagatccatttttagtaaaatagtagattttagagctttgtaaatattgtgtacatcaatcaaaagctagatatatatgcct |
218 |
Q |
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| T |
64877 |
ccaaagatccatgtttagcaaaatagtagattttagagctgtct---cattgcgtacatcaatcaaaagcaagatatatatgcct |
64796 |
T |
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