View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15279_low_39 (Length: 210)

Name: NF15279_low_39
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15279_low_39
NF15279_low_39
[»] chr6 (3 HSPs)
chr6 (18-92)||(7094602-7094676)
chr6 (18-92)||(8801618-8801693)
chr6 (18-90)||(3014015-3014087)


Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 7094676 - 7094602
Alignment:
Q  18 atgaattgggaagatgagaccaatgtggctaggaggaaaaaatagagaatggaagagaagaaggtatatgaaccc 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7094676 atgaattgggaagatgagaccaatgtggctaggaggaaaaaatagagaatggaagagaagaaggtatatgaaccc 7094602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 8801618 - 8801693
Alignment:
Q  18 atgaattgggaagatgagaccaatgtggctaggagg-aaaaaatagagaatggaagagaagaaggtatatgaaccc 92  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8801618 atgaattgggaagatgagaccaatgtggctaggaggaaaaaaatagagaatggaagagaagaaggtatatgaaccc 8801693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 3014087 - 3014015
Alignment:
Q  18 atgaattgggaagatgagaccaatgtggctaggaggaaaaaatagagaatggaagagaagaaggtatatgaac 90  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3014087 atgaatggggaagatgagaccaatgtggctaggagcaaaaaatagagaatggaagagaagaaggtatatgaac 3014015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University