View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1527_high_1 (Length: 467)
Name: NF1527_high_1
Description: NF1527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1527_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 3702097 - 3702530
Alignment:
| Q |
19 |
tgcatattgttcgaaagacatatcaagatacaaaagatgagttgtgtgagcaacaatatgagaggttcaaacagttggtggtagaagccaagaccctgct |
118 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3702097 |
tgcatattgttcgaaagacatatcaaggtacaaaagatgagttgtgcgagcaacaatatgagaggttcaaacagttggtggtagaagccaagacactgct |
3702196 |
T |
|
| Q |
119 |
tggaaaggcatgtcaagatttacgagatgagttgtgtgagtaaacattgtgagaactttgccaccagaaatttgttcaatgatcaaatggggacgggcct |
218 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702197 |
tggaaaggcatgtcaagatttaggagatgagttgtgtgagtaaacattgtgagaactttgccaccagaaatttgttcaatgatcaaatggggacgggcct |
3702296 |
T |
|
| Q |
219 |
gaacctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtagcaaaattcttactgttccagcaaattgcaggaagagctggtagaag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702297 |
gaacctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtggcaaaattcttactgttccagcaaattgcaggaagagctggtagaag |
3702396 |
T |
|
| Q |
319 |
aggatgcctttatcccgatggaccgctactaccttgcatttggatgatatggattatttgatcaagtgtttgaaacaaccctttgaccatgttacgaggg |
418 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
3702397 |
aggatgcctttatcccgatggaccgctactaccttgcatttggatgatatggattatttgatcaagtgtttgaaacagccctttgaccatgttacgacgg |
3702496 |
T |
|
| Q |
419 |
ttgacatttttcctttttacgagcatgtagaatt |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
3702497 |
ttgacatttttcctttttacgagcatgtagaatt |
3702530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 273 - 452
Target Start/End: Original strand, 3717062 - 3717240
Alignment:
| Q |
273 |
caaaattcttactgttccagcaaattgcaggaagagctggtagaagaggatgcctttatcccgatggaccg-ctactaccttgcatttggatgatatgga |
371 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |||| || | | ||||||||||| |||||||||||||| |
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|
| T |
3717062 |
caaaattcttattgttccagcaaattgcaggaagagctggtag--gagtatgcctttatcctgatgaactggccactaccttgcagttggatgatatgga |
3717159 |
T |
|
| Q |
372 |
ttatttgatcaagtgtttgaaacaaccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaatt |
452 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||| |
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| T |
3717160 |
ttatttgatcgagtgtttgaaacagccctttgaccacgttacgagggttggcattttccctttttacgagcaagtagaatt |
3717240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 296 - 452
Target Start/End: Original strand, 3705689 - 3705854
Alignment:
| Q |
296 |
attgcaggaagagctggtagaagaggatgcctttatcccgatggacc-gctactaccttgcatttggat-------gatatggattatttgatcaagtgt |
387 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
3705689 |
attgcaggaagatctgatagaagaggatgcctttatcctgatggacttgctactaccttgcatttggattttggatgatatggattatttgatcgtgtgt |
3705788 |
T |
|
| Q |
388 |
ttgaaacaa-ccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaatt |
452 |
Q |
| |
|
||| ||||| ||||||||||| ||||||||||||| |||||||| |||||||||||| |||||||| |
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| T |
3705789 |
ttggaacaagccctttgaccacgttacgagggttggcatttttcttttttacgagcaagtagaatt |
3705854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 3713522 - 3713693
Alignment:
| Q |
19 |
tgcatattgttcgaaagacatatcaagatacaaaagatgagttgtgtgagcaacaa---tatgagaggttcaaacagttggtggtagaagccaagaccct |
115 |
Q |
| |
|
||||||||||| |||||| |||| |||||||| ||||||||||||| |||||| || |||||||| ||||||||||||||||| ||||| |||||||| |
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| T |
3713522 |
tgcatattgtttgaaagatatataaagatacagaagatgagttgtgcgagcaaaaactatatgagagattcaaacagttggtggttgaagcaaagaccct |
3713621 |
T |
|
| Q |
116 |
gcttggaaaggcatgtcaagatttacgagatgagttgtgtgagtaaacattgtgagaactttgccaccagaaatt |
190 |
Q |
| |
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||||||||| | |||| ||||| | ||||||||||||||||| |||||| ||||| |||||||||||||||| |
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|
| T |
3713622 |
gcttggaaatgtatgttaagatacaggagatgagttgtgtgag-caacattatgaga--tttgccaccagaaatt |
3713693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 217 - 443
Target Start/End: Original strand, 3708327 - 3708561
Alignment:
| Q |
217 |
ctgaacctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtagcaaaattct-----tactgtt----ccagcaaattgcaggaaga |
307 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| ||||| | | || | ||||| ||||| |
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| T |
3708327 |
ctgaatctcaacatttgaagggtgattttcaatagcctttcgaagtacaatggtgacaaaattcttcgtgtactggtgtcacaagttatttgcaagaaga |
3708426 |
T |
|
| Q |
308 |
gctggtagaagaggatgcctttatcccgatggac-cgctactaccttgcatttggatgatatggattatttgatcaagtgtttgaaacaaccctttgacc |
406 |
Q |
| |
|
|| ||| |||||||||||||||||| |||||||| | | || ||||||||||| |||||| || ||| ||||| |||||||||||| | ||||||| | |
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|
| T |
3708427 |
gccggttgaagaggatgcctttatctcgatggactcaccacaaccttgcatttagatgatttgatttacttgatagagtgtttgaaacca-cctttgatc |
3708525 |
T |
|
| Q |
407 |
atgttacgagggttgacatttttcctttttacgagca |
443 |
Q |
| |
|
||| ||| | ||||| | |||||||||||| ||||| |
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| T |
3708526 |
atgctactaaggttggc-cttttcctttttatgagca |
3708561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 3713740 - 3713791
Alignment:
| Q |
273 |
caaaattcttactgttccagcaaattgcaggaagagctggtagaagaggatg |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
3713740 |
caaaattcttactgttccagcaaattgcaggaagtgctggtggaagaggatg |
3713791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 3716900 - 3717013
Alignment:
| Q |
75 |
tatgagaggttcaaacagttggtggtagaagccaagaccctgcttggaaaggcatgtcaagatttacgagatgagttgtgtgag----taaacattgtga |
170 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||| ||||| |||||||||| | || |||||||||||||| | |||||| ||| |
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|
| T |
3716900 |
tatgagaggttcaaacagttggtggttgaatccaagaccctgc----aaaggtatgtcaagatacaagaaatgagttgtgtgagcaaattaacattatga |
3716995 |
T |
|
| Q |
171 |
gaactttgccaccagaaa |
188 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
3716996 |
gagctttgccaccagaaa |
3717013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 3719982 - 3720018
Alignment:
| Q |
19 |
tgcatattgttcgaaagacatatcaagatacaaaaga |
55 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||| |
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|
| T |
3719982 |
tgcatattgttcaaaagacatatcaagatacagaaga |
3720018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 206 - 452
Target Start/End: Complemental strand, 3520411 - 3520150
Alignment:
| Q |
206 |
tggggacgggcctgaacctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtagcaaaattcttactgttccagc------------ |
293 |
Q |
| |
|
|||||| |||||| ||||| ||||||| |||||||||||| | || |||||| |||||||| ||| |||||||||| |||||||||| |
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|
| T |
3520411 |
tggggatgggccttaaccttaacattcgaagggtgatttttaataacctttcaaagtacaacggtgacaaaattcttcctgttccagcgtcacaggttaa |
3520312 |
T |
|
| Q |
294 |
--aaattgcaggaagagctggtagaagaggatgcctttatcccgatggac-cgctactaccttgcatttggatgatatggattatttgatcaagtgtttg |
390 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||||||||||||||| ||| ||||| |||||||| || ||| ||||||| |||||| |||||||| |
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|
| T |
3520311 |
gcaaattgccggaagagctggtcgaagaggatgtgtttatcccgatggactcgccactactttgcatttagaggatttggattacttgatcgagtgtttg |
3520212 |
T |
|
| Q |
391 |
aaacaaccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaatt |
452 |
Q |
| |
|
|||||||||||||| ||||| || ||||| | ||||||||| ||| ||||| || ||||| |
|
|
| T |
3520211 |
aaacaaccctttgatcatgtggagaaggttggcctttttccttattatgagcaggttgaatt |
3520150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 3520717 - 3520615
Alignment:
| Q |
22 |
atattgttcgaaagacatatcaagatacaaaagatgagttgtgtgagcaacaatatgagaggttcaaacagttggtggtagaagccaagaccctgcttgg |
121 |
Q |
| |
|
||||||||||||||| | ||| || ||| |||||| |||| ||||||||| |||||||||||||||| |||||| || ||||| |||||||||||||| |
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|
| T |
3520717 |
atattgttcgaaagatctgtcaggaaacaggagatgatttgtatgagcaacattatgagaggttcaaaccgttggtagtcgaagcaaagaccctgcttgg |
3520618 |
T |
|
| Q |
122 |
aaa |
124 |
Q |
| |
|
||| |
|
|
| T |
3520617 |
aaa |
3520615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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