View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1527_high_11 (Length: 248)
Name: NF1527_high_11
Description: NF1527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1527_high_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 35031368 - 35031127
Alignment:
| Q |
8 |
attattctaatttgaatatttaatttatggtttttgatgacttcaaatcaaactttatttt-acatacataaataatttcacatttaatccaacaaattg |
106 |
Q |
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|||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |
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| T |
35031368 |
attattgtaacttgaatctttaatttatggtttttgatgacttcaaatcaaactttatttttacatacataaataattttacatttaatcgaacaaattg |
35031269 |
T |
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| Q |
107 |
tttttgaataattgattttataaaaataattttagttaaaagtgaattttatataatgtgatttatgtttgactacgtattcataaaactaaattgaaag |
206 |
Q |
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| T |
35031268 |
tttttgaataattgattttataaaaataattttagttaaaagtgagttttatataatgtgatttatgtttgactacgtattcataaaactaaattgaaag |
35031169 |
T |
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| Q |
207 |
atgaatttgagtataaaaatcatatttgaattcgtaaactac |
248 |
Q |
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| T |
35031168 |
atgaatttgagtataaaaatcatatttgaatttgtaaactac |
35031127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 40335703 - 40335641
Alignment:
| Q |
116 |
aattgatttt-ataaaaataattttagttaaaagtgaattttatataatgtgatttatgtttg |
177 |
Q |
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| T |
40335703 |
aattgattttgataaaattaattttggttaaaagtgaattaaatttaaagtgatttatgtttg |
40335641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 32902021 - 32901957
Alignment:
| Q |
115 |
taattgattttataaaaata-attttagttaaaagtgaattttatataatgtgatttatgtttga |
178 |
Q |
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| T |
32902021 |
taattgattctataaaaattgattttaattaaaagtgaattaaatataacgtgatttatgtttga |
32901957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 42644364 - 42644302
Alignment:
| Q |
116 |
aattgattttataaaaata-attttagttaaaagtgaattttatataatgtgatttatgtttg |
177 |
Q |
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| T |
42644364 |
aattgattttataaaaattgattttagttaaaagtgagttgaatgtaaagtgatttatgtttg |
42644302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 7644726 - 7644691
Alignment:
| Q |
116 |
aattgattttataaaaataattttagttaaaagtga |
151 |
Q |
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| T |
7644726 |
aattgattttataaaattaattttagttaaaagtga |
7644691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 40633764 - 40633799
Alignment:
| Q |
116 |
aattgattttataaaaataattttagttaaaagtga |
151 |
Q |
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| T |
40633764 |
aattgattttataaaattaattttagttaaaagtga |
40633799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 34063223 - 34063187
Alignment:
| Q |
102 |
aattgtttttgaataattgattttataaaaataattt |
138 |
Q |
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| T |
34063223 |
aattgattttgaataattgattttataaaactaattt |
34063187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 48320952 - 48320988
Alignment:
| Q |
115 |
taattgattttataaaaataattttagttaaaagtga |
151 |
Q |
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| T |
48320952 |
taattgattttataaaactaactttagttaaaagtga |
48320988 |
T |
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