View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1527_high_17 (Length: 219)
Name: NF1527_high_17
Description: NF1527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1527_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 6270905 - 6270704
Alignment:
| Q |
1 |
gaatttgaattgcttcaatttaggtgattatgcaattttcaatctgaatcaacgtattaaaattagacgaccaacctgatttatcaaagttgaaaagtcg |
100 |
Q |
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| T |
6270905 |
gaatttgaattgcttcaatttaggtgattatgcaattttcaatctgaatcaacgtattaaaattagacgaccaacctgatttatcaaagttgaaaagtcg |
6270806 |
T |
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| Q |
101 |
atcgttcaatactaatctaacagtctagattgtatgattgcgtcaatattttattttttgtaaggagtggatttatttaaatgaaagactagatattgat |
200 |
Q |
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| T |
6270805 |
atcgttcaatactaatctaacagtctagattgtatgattacgtcaatatttt-ttttttgtaaggagtggatttatttaaatgaaagactagatattgat |
6270707 |
T |
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| Q |
201 |
aat |
203 |
Q |
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||| |
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| T |
6270706 |
aat |
6270704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 6278504 - 6278463
Alignment:
| Q |
79 |
atttatcaaagttgaaaagtcgatcgttcaatactaatctaa |
120 |
Q |
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| T |
6278504 |
atttatcgaagttaaaaagtcgatcgtccaatactaatctaa |
6278463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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