View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1527_high_19 (Length: 212)
Name: NF1527_high_19
Description: NF1527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1527_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 12 - 195
Target Start/End: Complemental strand, 31496125 - 31495942
Alignment:
| Q |
12 |
agcaaaggcaacacaagaaatcatgctcaataggtctggtttttcgttcgaagctttatcggagacaaaagagtacaaagatgtgagcaacaaaacaaga |
111 |
Q |
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| T |
31496125 |
agcaaaggcaacacaagaaatcatgctcaataggtctggtttttcgttcgaagctttatcggagacaaaagagtacaaagatgtgagcaacaaaacaaga |
31496026 |
T |
|
| Q |
112 |
acacccaaatgagctctcagcaagaatctctttgaaagtttccattttttcaaaaataacatcatgctactgatactgaaactt |
195 |
Q |
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| T |
31496025 |
acacccaaatgagctctcagcaagaatctctttgaaagtttccattttttcaaaaataacatcatgctactgatactgaaactt |
31495942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 65 - 195
Target Start/End: Complemental strand, 40844535 - 40844405
Alignment:
| Q |
65 |
ctttatcggagacaaaagagtacaaagatgtgagcaacaaaacaagaacacccaaatgagctctcagcaagaatctctttgaaagtttccattttttcaa |
164 |
Q |
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| T |
40844535 |
ctttatcagatacaaaagagtataaagatgttagcaacaaaacaagaacacccaaatgagctttcagtaagaatctccttgaaagtttccatttcttcaa |
40844436 |
T |
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| Q |
165 |
aaataacatcatgctactgatactgaaactt |
195 |
Q |
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| T |
40844435 |
aaataacatcatgctactaatactgaaactt |
40844405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 31461456 - 31461393
Alignment:
| Q |
133 |
aagaatctctttgaaagtttccatttt-ttcaaaaataacatcatgctactgatactgaaactt |
195 |
Q |
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| T |
31461456 |
aagaatctccttgaaagtttcccttttattcaaaagtaacatcatgcgactgatactgaaactt |
31461393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 31388785 - 31388722
Alignment:
| Q |
133 |
aagaatctctttgaaagtttccatttt-ttcaaaaataacatcatgctactgatactgaaactt |
195 |
Q |
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||||| ||| |||||| ||||| |||| ||||||| ||||||||||| |||||||||||||||| |
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| T |
31388785 |
aagaaactccttgaaactttcccttttattcaaaagtaacatcatgcgactgatactgaaactt |
31388722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 140185 - 140272
Alignment:
| Q |
27 |
agaaatcatgctcaataggtctggt-ttttcgttcgaagctttatcggagacaaaagagtacaaagatgtgagcaacaaaacaagaaca |
114 |
Q |
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| T |
140185 |
agaaatcagactcaagaggtctggtgttttagttcaaagctttattagatacaaaagagtacaa-gatgttagcaacaaaacaagaaca |
140272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 148206 - 148293
Alignment:
| Q |
27 |
agaaatcatgctcaataggtctggt-ttttcgttcgaagctttatcggagacaaaagagtacaaagatgtgagcaacaaaacaagaaca |
114 |
Q |
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|||||||| ||||| ||||||||| |||| |||| ||||||||| || |||||||||||||| ||||| |||||||||||||||||| |
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| T |
148206 |
agaaatcagactcaagaggtctggtgttttagttcaaagctttattagatacaaaagagtacaa-gatgttagcaacaaaacaagaaca |
148293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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