View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1527_high_3 (Length: 414)
Name: NF1527_high_3
Description: NF1527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1527_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 73 - 412
Target Start/End: Complemental strand, 3027484 - 3027145
Alignment:
| Q |
73 |
gttggtgtgttatcaagtcatnnnnnnngttcatctggcacgccacacgaactttcgttagtcacttgatggttgagtcaacaacaggggagaaaaatca |
172 |
Q |
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| T |
3027484 |
gttggtgtgttatcaagtcataaaaaaagttcatctggcacgccacacgaactttcgttagtcacttgatggttgagtcaacaacaggggagaaaaatca |
3027385 |
T |
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| Q |
173 |
aaagagataactttcaaaagatgtaaacaagtcattttaatataaggactaaaaccgaaatacctaatagttatatggaccaaaaatatatttaatccaa |
272 |
Q |
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|||| |||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3027384 |
aaagggataacttccaaaagatgcaaacaagtcattttaatataaggattaaaaccgaaatacctaatagttatatggacgaaaaatatatttaatccaa |
3027285 |
T |
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| Q |
273 |
tgaataatatatcacatgtctagttaattg-nnnnnnnnccattcacaagagaacatcacattttctcaattcgtagaattatttccttnnnnnnnnnnn |
371 |
Q |
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| T |
3027284 |
taaataatatatcacatgtctagttaattgtttttttttccattcacaagagaacatcacattttctcaattcgtagaattatttcctt-aaaaaaaaaa |
3027186 |
T |
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| Q |
372 |
ttgatataaaatgtttttcctttttaaagaatcagcctatg |
412 |
Q |
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| T |
3027185 |
ttgatataaaatgtttttcctttttaaagaatcagcctatg |
3027145 |
T |
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