View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1527_high_7 (Length: 343)
Name: NF1527_high_7
Description: NF1527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1527_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 327
Target Start/End: Complemental strand, 2497221 - 2496905
Alignment:
| Q |
9 |
aagaaaattataaaacaatatagatattattacaatcatgtatatttaatacatggatgtataaagataaattactctagacatgaataagaagaataaa |
108 |
Q |
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| T |
2497221 |
aagaatattataaaacaatatagatattattacaatcatgtatatttaatacatagatgtataaagataaattactctagacatgaataagaagaacaaa |
2497122 |
T |
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| Q |
109 |
tccgtcaaatcgtgatagcaatattcttttctgtgtattttttctgtacacaataaagatcaaattggtctgatctgaatggtagctacatctggattta |
208 |
Q |
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| T |
2497121 |
tccgtcaaatcgtgatagcaatattcttttctgtgtattttttctgtacacaataaa-atcaaattggtctgatctgaatggtagctacatctggattta |
2497023 |
T |
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| Q |
209 |
ttaagcacgccgtattgaatttattctgtgggataaaagtaaaaatggatttgacattatgcttattgagaaatataggattttcttactaaacattgag |
308 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2497022 |
ttaagcacgccgtattgaatttgttctgtgggat-aaagtaaaaatgaatttgacattatgcttattgagaaatataggattttcttactaaatattgag |
2496924 |
T |
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| Q |
309 |
aaatatagtgtgcaatctc |
327 |
Q |
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||||||||||||||||||| |
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| T |
2496923 |
aaatatagtgtgcaatctc |
2496905 |
T |
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