View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1527_low_12 (Length: 278)

Name: NF1527_low_12
Description: NF1527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1527_low_12
NF1527_low_12
[»] chr1 (16 HSPs)
chr1 (8-265)||(10901608-10901865)
chr1 (143-265)||(11004991-11005113)
chr1 (143-265)||(11010909-11011031)
chr1 (143-261)||(10914612-10914730)
chr1 (143-261)||(11007751-11007869)
chr1 (143-265)||(11033200-11033322)
chr1 (147-265)||(10979343-10979461)
chr1 (143-261)||(11028576-11028694)
chr1 (143-261)||(10974269-10974387)
chr1 (143-261)||(10903452-10903567)
chr1 (16-75)||(10908695-10908756)
chr1 (158-256)||(9453808-9453906)
chr1 (161-256)||(9432824-9432919)
chr1 (155-211)||(9318271-9318327)
chr1 (155-211)||(9319975-9320031)
chr1 (155-211)||(9350292-9350348)
[»] chr6 (1 HSPs)
chr6 (155-211)||(15927177-15927233)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 10901865 - 10901608
Alignment:
Q  8 tagcaaagggaagattgattttaaaggcaccattgtcggtgatagcacttttatttattttcaagcacggtctaaggtgaaagcactgtcgcacacatac 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10901865 tagcaaagggaagattgattttaaaggcaccattgtcggtgatagcacttttatttattttcaagcacggtctacggtgaaagcactgtcgcacacatac 10901766  T
Q  108 nnnnnnnnagatttaattttattactaaacatatgagcattgtttcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacag 207  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10901765 ttttttttagatttaattttattactaaacatatgagcattgtttcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacag 10901666  T
Q  208 aaatgtcggcacaatatctcgcaaagctgatgtctatagttttggaatgttgttgatg 265  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10901665 aaatgtcggcacaatatctcacaaagctgatgtctatagttttggaatgttgttgatg 10901608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 143 - 265
Target Start/End: Original strand, 11004991 - 11005113
Alignment:
Q  143 agcattgtttcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcgcaaagctgatgtct 242  Q
    |||||||| || ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  11004991 agcattgtgtccttaactgcagcaagaggaaccattggatacatggcccctgaactattctacagaaatgtcggcacaatatctcacaaagctgatgtct 11005090  T
Q  243 atagttttggaatgttgttgatg 265  Q
    |||| ||||| ||||||||||||    
T  11005091 atagctttgggatgttgttgatg 11005113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 11011031 - 11010909
Alignment:
Q  143 agcattgtttcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcgcaaagctgatgtct 242  Q
    |||||||| |||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||  |||||||||||| |    
T  11011031 agcattgtgtcattaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtat 11010932  T
Q  243 atagttttggaatgttgttgatg 265  Q
    |||||||||| ||||||||||||    
T  11010931 atagttttgggatgttgttgatg 11010909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 10914730 - 10914612
Alignment:
Q  143 agcattgtttcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcgcaaagctgatgtct 242  Q
    |||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |    
T  10914730 agcattgtgtcattaactgcagcaagaggaaccatcggatatatggcccctgaattattctatagaaatgtcggcacaatatctcacaaagctgatgtat 10914631  T
Q  243 atagttttggaatgttgtt 261  Q
    |||| ||||| ||||||||    
T  10914630 atagctttgggatgttgtt 10914612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 11007869 - 11007751
Alignment:
Q  143 agcattgtttcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcgcaaagctgatgtct 242  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||  |||||||||||| |    
T  11007869 agcattgtgtcattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaatgtcggcacgatatcttacaaagctgatgttt 11007770  T
Q  243 atagttttggaatgttgtt 261  Q
    |||||||||| ||||||||    
T  11007769 atagttttgggatgttgtt 11007751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 11033322 - 11033200
Alignment:
Q  143 agcattgtttcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcgcaaagctgatgtct 242  Q
    ||||||||  ||||||| ||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||  |||||||||||| |    
T  11033322 agcattgtcacattaactgcagcaagaggaaccattggatatatggcccctgaactattctaccgaaatgtcggcacaatatcttacaaagctgatgttt 11033223  T
Q  243 atagttttggaatgttgttgatg 265  Q
    |||||||||| ||||||||||||    
T  11033222 atagttttgggatgttgttgatg 11033200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 10979461 - 10979343
Alignment:
Q  147 ttgtttcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcgcaaagctgatgtctatag 246  Q
    |||| |||||||| ||||||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||  |||||||||||| |||||    
T  10979461 ttgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatag 10979362  T
Q  247 ttttggaatgttgttgatg 265  Q
    |||||| ||||||||||||    
T  10979361 ttttgggatgttgttgatg 10979343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 11028576 - 11028694
Alignment:
Q  143 agcattgtttcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcgcaaagctgatgtct 242  Q
    |||||||| |||||||| ||||||||| |||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||  ||||||||||||||    
T  11028576 agcattgtgtcattaactgcagcaagaagaaccattggatacatggcccctgaactattctatagaaatgttggcacaatatcttacaaagctgatgtct 11028675  T
Q  243 atagttttggaatgttgtt 261  Q
    |||| ||||| ||||||||    
T  11028676 atagctttgggatgttgtt 11028694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 10974387 - 10974269
Alignment:
Q  143 agcattgtttcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcgcaaagctgatgtct 242  Q
    ||||||||  ||||||| || ||||||||||| ||||||||||||||||||||| | |||||||||||| | ||||||||||||  ||||||||||||||    
T  10974387 agcattgtgccattaactgctgcaagaggaacgattggatacatggcccctgaactgttctacagaaatattggcacaatatcttacaaagctgatgtct 10974288  T
Q  243 atagttttggaatgttgtt 261  Q
    |||| ||||| ||||||||    
T  10974287 atagctttgggatgttgtt 10974269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 10903567 - 10903452
Alignment:
Q  143 agcattgtttcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcgcaaagctgatgtct 242  Q
    |||||||| |||||||| |||||||||||||||||||||||    ||||||||| | |||||||||||||| || |  ||||||  ||||||||||||||    
T  10903567 agcattgtgtcattaactgcagcaagaggaaccattggatat---gcccctgaacttttctacagaaatgttggaatgatatcttacaaagctgatgtct 10903471  T
Q  243 atagttttggaatgttgtt 261  Q
    |||| ||||| ||||||||    
T  10903470 atagctttgggatgttgtt 10903452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 10908756 - 10908695
Alignment:
Q  16 ggaagattgattttaaaggcaccattgtc--ggtgatagcacttttatttattttcaagcac 75  Q
    |||||||||||||| ||||||||||||||  ||||||||| |||||||||||||||||||||    
T  10908756 ggaagattgattttgaaggcaccattgtcaaggtgatagcgcttttatttattttcaagcac 10908695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 9453808 - 9453906
Alignment:
Q  158 acagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcgcaaagctgatgtctatagttttggaatg 256  Q
    ||||||||||||||||| ||||| |||||||| |||||||| ||||||  |||| | || | |||||| | ||| || ||||| |||||||||||||||    
T  9453808 acagcagcaagaggaacaattggttacatggctcctgaattgttctaccaaaatattgggagaatatcacacaaggccgatgtgtatagttttggaatg 9453906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 256
Target Start/End: Original strand, 9432824 - 9432919
Alignment:
Q  161 gcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcgcaaagctgatgtctatagttttggaatg 256  Q
    |||||||||||||| ||||| |||||||| |||||||| ||||||  |||| | || | |||||| | ||| || ||||| |||||||||||||||    
T  9432824 gcagcaagaggaacaattggttacatggctcctgaattgttctaccaaaatattgggagaatatcacacaaggccgatgtgtatagttttggaatg 9432919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 9318271 - 9318327
Alignment:
Q  155 ttaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaat 211  Q
    ||||| ||||| |||||||| |||||||||||||| |||||||| ||||||| ||||    
T  9318271 ttaactgcagctagaggaacaattggatacatggctcctgaattgttctacaaaaat 9318327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 9320031 - 9319975
Alignment:
Q  155 ttaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaat 211  Q
    ||||| |||||||||||||| |||||||| ||||| |||||||| ||||||| ||||    
T  9320031 ttaactgcagcaagaggaacaattggatatatggctcctgaattgttctacaaaaat 9319975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 9350348 - 9350292
Alignment:
Q  155 ttaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaat 211  Q
    ||||| |||||||||||||| |||||||| ||||| ||||| || ||||||| ||||    
T  9350348 ttaactgcagcaagaggaacaattggatatatggctcctgagttgttctacaaaaat 9350292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 15927177 - 15927233
Alignment:
Q  155 ttaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaat 211  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||||||||| ||||    
T  15927177 ttaactgcagcaagaggaacgattggatacatggctcctgaattattctacaaaaat 15927233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University