View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1527_low_13 (Length: 270)
Name: NF1527_low_13
Description: NF1527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1527_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 33333537 - 33333784
Alignment:
| Q |
13 |
aatattcagagtagagaacacttatctctattaaaagtgtttcgatttcactcctaaaagttaacttaatacacaagggtgcgcatcataagcctagttc |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| |
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| T |
33333537 |
aataatcagagtagagaacacttatctctattaaaagtgtttcgatttcactcctaaaagttagcttaatacacaagggtgtgcatcatgagcctagttc |
33333636 |
T |
|
| Q |
113 |
caatttccacttttgttagcaaaatccgactcttaaaccatgttaaatgtgttgggatttcactttcaaaaatt--------aaatgagagtgtccaaac |
204 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
33333637 |
caatttccacttttgctggcaaaatccgactcttaaaccatgttaaatgtgttgggatttcactttcaaaaattagttcataaaatgagaatgtccaaac |
33333736 |
T |
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| Q |
205 |
acatatatacactacacagccaaaaaactttaggaaaatggggactcg |
252 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33333737 |
acatatatacactacacagccgaaaaactttaggaaaatggggactcg |
33333784 |
T |
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