View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1527_low_2 (Length: 446)

Name: NF1527_low_2
Description: NF1527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1527_low_2
NF1527_low_2
[»] chr5 (5 HSPs)
chr5 (2-400)||(39952528-39952927)
chr5 (31-152)||(23920117-23920238)
chr5 (129-224)||(22917308-22917404)
chr5 (129-227)||(13596832-13596931)
chr5 (134-200)||(1685106-1685172)
[»] chr3 (3 HSPs)
chr3 (224-400)||(50416814-50416993)
chr3 (166-227)||(41053754-41053816)
chr3 (134-214)||(42614280-42614360)
[»] scaffold0001 (1 HSPs)
scaffold0001 (31-209)||(12729-12907)
[»] chr8 (5 HSPs)
chr8 (29-199)||(24847957-24848127)
chr8 (31-152)||(30344377-30344498)
chr8 (115-227)||(28940743-28940856)
chr8 (136-227)||(2680265-2680357)
chr8 (172-227)||(30344500-30344557)
[»] chr6 (7 HSPs)
chr6 (31-152)||(18985279-18985400)
chr6 (103-199)||(8746751-8746847)
chr6 (134-227)||(2627674-2627763)
chr6 (168-227)||(11681699-11681760)
chr6 (135-227)||(22978347-22978435)
chr6 (135-227)||(23809968-23810056)
chr6 (132-214)||(34218741-34218820)
[»] chr7 (6 HSPs)
chr7 (31-155)||(25350590-25350714)
chr7 (31-155)||(25356284-25356408)
chr7 (161-214)||(33097879-33097932)
chr7 (129-224)||(25731043-25731139)
chr7 (166-227)||(33105296-33105358)
chr7 (149-209)||(31299417-31299477)
[»] chr2 (3 HSPs)
chr2 (117-226)||(25123459-25123571)
chr2 (136-227)||(45003691-45003783)
chr2 (148-214)||(15084343-15084409)
[»] chr4 (4 HSPs)
chr4 (136-227)||(5482954-5483046)
chr4 (136-227)||(1694811-1694903)
chr4 (135-214)||(36678774-36678851)
chr4 (161-214)||(1967467-1967520)
[»] chr1 (3 HSPs)
chr1 (129-227)||(29693301-29693400)
chr1 (134-227)||(52037420-52037514)
chr1 (134-214)||(13624230-13624309)


Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 2 - 400
Target Start/End: Original strand, 39952528 - 39952927
Alignment:
Q  2 taatttcgctaatcacttcatttttgg-agcatctatatttatgctgcagtacattatgtatgtaatgacaataattgttatactatcttttatgccatg 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39952528 taatttcgctaatcacttcatttttggcagcatctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatg 39952627  T
Q  101 ttttagaccatgcatcacaaatattcggattatgcgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagag 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  39952628 ctttagaccatgcatcacaaatattcggattatgcgaccttcgttctcaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccgttagag 39952727  T
Q  201 caaatttttaaaaagtacgtaattcaaatgagaataaatcatcgattgtataaactttgttttgatggttaacatcagaaaccatagcttgcaacatatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39952728 caaatttttaaaaagtacgtaattcaaatgagaataaatcatcgattgtataaactttgttgtgatggttaacatcagaaaccatagcttgcaacatatt 39952827  T
Q  301 tgggaaagactaaaagtttggatatatctgataatgtgacatggatgtgtctattattttagtgatatattgatgagaaagctagcatctaacttaacta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39952828 tgggaaagactaaaagtttggatatatctgataatgtgacatggatgtgtctattattttagtgatatattgatgtgaaagctagcatctaacttaacta 39952927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 23920117 - 23920238
Alignment:
Q  31 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatactatcttttatgccatgttttagaccatgcatcacaaatattcggat 130  Q
    ||||||||||| ||||| ||||||||||||| | |||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  23920117 catctatatttctgctggagtacattatgtacgcaatgacaataattgttatgctatctttaatgccatgtcttagaccatgcatcacaaatattcggat 23920216  T
Q  131 tatgcgaccttcgttcccaaat 152  Q
    |||| ||||||||||| |||||    
T  23920217 tatgtgaccttcgttcacaaat 23920238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 22917308 - 22917404
Alignment:
Q  129 attatgcgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaatt 224  Q
    ||||||| |||||||||| |||||||| ||  |||||||||||   ||||||||||||||| ||| |||||||||| |||||||||| |||||||||    
T  22917308 attatgcaaccttcgttctcaaatttacgaagaatggcaatgtcgcgtaatttgaacatctatcctttagagcaaattttttaaaaattacgtaatt 22917404  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 13596832 - 13596931
Alignment:
Q  129 attatgcgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaattcaa 227  Q
    ||||||| |||||||||| |||||||| ||   ||||||||||    |||||||||||||||||| |||||||||  |||||||||| ||||||||||||    
T  13596832 attatgcaaccttcgttctcaaatttacgaagcatggcaatgtcgcataatttgaacatctctcctttagagcaatttttttaaaaaatacgtaattcaa 13596931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 1685172 - 1685106
Alignment:
Q  134 gcgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagag 200  Q
    ||||||||||||| |||| ||| ||  ||| ||||||||| ||||||||||||||||||| ||||||    
T  1685172 gcgaccttcgttctcaaaattacgaagaatagcaatgttccgtaatttgaacatctctcctttagag 1685106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 224 - 400
Target Start/End: Complemental strand, 50416993 - 50416814
Alignment:
Q  224 tcaaatgagaataaatcatcgattgtataaactttgttttgatggttaacatcagaaaccatagcttgcaacatatttgggaaagactaaaagtttggat 323  Q
    |||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| ||    
T  50416993 tcaaatgagaataaattatagattgtataaactttgttgtgatggttaacatcagaaaccattgctttcaacatatctgggaaagactaaaagtttgcat 50416894  T
Q  324 atatctgataatgtgacatggatgtgtc---tattattttagtgatatattgatgagaaagctagcatctaacttaacta 400  Q
    ||||||||||| ||||||||| ||||||   ||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  50416893 atatctgataacgtgacatggctgtgtcatttattattttagtgttatattgatgtgaaagctagcatctaacttaacta 50416814  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 41053754 - 41053816
Alignment:
Q  166 caatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaattcaa 227  Q
    |||||||| |||||||||||||||| |  |||||||||| |||||||||| || |||||||||    
T  41053754 caatgttccgtaatttgaacatctcacatttagagcaaattttttaaaaaatatgtaattcaa 41053816  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 42614360 - 42614280
Alignment:
Q  134 gcgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 214  Q
    ||||||||||||| |||||||  ||  |||  |||||||  ||||||||||||||||| | ||| || |||||||||||||    
T  42614360 gcgaccttcgttctcaaattttcgaagaataacaatgtttcgtaatttgaacatctcttctttaaagtaaatttttaaaaa 42614280  T

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Target: scaffold0001 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 31 - 209
Target Start/End: Original strand, 12729 - 12907
Alignment:
Q  31 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatactatcttttatgccatgttttagaccatgcatcacaaatattcggat 130  Q
    |||||| |||| ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||  ||||| ||||||||||||||||||||||    
T  12729 catctacatttctgctgcagtacattatgtatgtaatgacaatgattgttatgttatcttttatgccatgccttagatcatgcatcacaaatattcggat 12828  T
Q  131 tatgcgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt 209  Q
    ||||||||||||||||  ||||||| ||  ||||||||| ||   | |||||||||||||||| |||||| || |||||    
T  12829 tatgcgaccttcgttcttaaatttacgaagaatggcaatatttcctcatttgaacatctctcctttagagtaatttttt 12907  T

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Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 29 - 199
Target Start/End: Complemental strand, 24848127 - 24847957
Alignment:
Q  29 agcatctatatttatgctgcagtacattatgtatgtaatgacaataattgttatactatcttttatgccatgttttagaccatgcatcacaaatattcgg 128  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||  |||||||  ||||||| |||  |||  ||||||||||||||  ||||||||||    
T  24848127 agcatctatatttgtgctgcagtacgttatgtatgtaatgacaatggttgttatgttatctttgatgttatgccttagaccatgcatcgtaaatattcgg 24848028  T
Q  129 attatgcgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattaga 199  Q
    |||||||||||||||||| |||||||| ||  |||| ||||||| | |||||||||||||||||| |||||    
T  24848027 attatgcgaccttcgttctcaaatttacgaagaatgacaatgttttataatttgaacatctctcctttaga 24847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 30344377 - 30344498
Alignment:
Q  31 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatactatcttttatgccatgttttagaccatgcatcacaaatattcggat 130  Q
    ||||||||||| || || ||||||||||||| | |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  30344377 catctatatttctgttgtagtacattatgtacgcaatgacaataattgttatgctatcttttatgccatgtcttagaccatgcatcacaaatattcggat 30344476  T
Q  131 tatgcgaccttcgttcccaaat 152  Q
    |||| ||||||| ||| |||||    
T  30344477 tatgtgaccttcattcacaaat 30344498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 28940856 - 28940743
Alignment:
Q  115 tcacaaatattcggattatgcgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaa 213  Q
    |||||||||||| ||||||| |||||| |||| ||| |||| ||  |||| |||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  28940856 tcacaaatattcagattatgggacctttgttctcaagtttacgaagaatgacaatgttctgtaatttgaacatctctcctttagaacaaattttttaaaa 28940757  T
Q  214 agtacgtaattcaa 227  Q
    ||||||||||||||    
T  28940756 agtacgtaattcaa 28940743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 2680357 - 2680265
Alignment:
Q  136 gaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttta-aaaagtacgtaattcaa 227  Q
    ||||||||||| |||||||||||  || | |||| ||| ||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||    
T  2680357 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaatttttaaaaaaatacgtaattcaa 2680265  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 30344500 - 30344557
Alignment:
Q  172 tctgtaatttgaacatctctccattagagcaaa--tttttaaaaagtacgtaattcaa 227  Q
    |||||||||||||||||||||| ||||||| ||  ||||| |||| ||||||||||||    
T  30344500 tctgtaatttgaacatctctcctttagagctaatttttttgaaaaatacgtaattcaa 30344557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 18985400 - 18985279
Alignment:
Q  31 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatactatcttttatgccatgttttagaccatgcatcacaaatattcggat 130  Q
    ||||||||||| ||||| ||||||||||||| | |||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18985400 catctatatttctgctggagtacattatgtacgcaatgacaataattgttatgctatctttaatgccatgtcttagaccatgcatcacaaatattcggat 18985301  T
Q  131 tatgcgaccttcgttcccaaat 152  Q
    |||| ||||||||||| |||||    
T  18985300 tatgtgaccttcgttcacaaat 18985279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 8746847 - 8746751
Alignment:
Q  103 ttagaccatgcatcacaaatattcggattatgcgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattaga 199  Q
    ||||||||| ||||  |||||||| |||||||||||||| |||| |||||||| ||  |||| ||||||||  ||||||||||||| |||| |||||    
T  8746847 ttagaccatacatcgtaaatattcagattatgcgacctttgttctcaaatttacgaagaatgacaatgttccataatttgaacatccctcctttaga 8746751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 2627763 - 2627674
Alignment:
Q  134 gcgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 227  Q
    ||||||||||||| |||||||| ||  ||| |||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  2627763 gcgaccttcgttctcaaatttacgaagaatagcaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 2627674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 11681760 - 11681699
Alignment:
Q  168 atgttctgtaatttgaacatctctccattagagcaaattttt--aaaaagtacgtaattcaa 227  Q
    |||||||||||||||||||||||||| |||||| || |||||  ||||||||||||||||||    
T  11681760 atgttctgtaatttgaacatctctcctttagagtaatttttttaaaaaagtacgtaattcaa 11681699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 22978435 - 22978347
Alignment:
Q  135 cgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 227  Q
    |||||||||||| |||||||| ||  ||   ||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  22978435 cgaccttcgttctcaaatttacgaagaacaacaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 22978347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 23809968 - 23810056
Alignment:
Q  135 cgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 227  Q
    |||||||||||| |||||||| ||  ||   ||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  23809968 cgaccttcgttctcaaatttacgaagaacaacaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 23810056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 34218741 - 34218820
Alignment:
Q  132 atgcgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 214  Q
    ||||||||||||||  | |||||||||  |||  |||| ||| ||||||||||||||||||| |   ||||||||||||||||    
T  34218741 atgcgaccttcgttttcgaatttatgaagaattacaatattccgtaatttgaacatctctcctt---agcaaatttttaaaaa 34218820  T

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Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 155
Target Start/End: Complemental strand, 25350714 - 25350590
Alignment:
Q  31 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatactatcttttatgccatgttttagaccatgcatcacaaatattcggat 130  Q
    ||||||||||||||||| |||||||||| |||||||| ||||| ||||||||  ||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  25350714 catctatatttatgctgtagtacattatctatgtaataacaatgattgttatgttattttttatgtcatgccttagaccatgcatcacaaatattcggat 25350615  T
Q  131 tatgcgaccttcgttcccaaattta 155  Q
    |||||| ||||||||| ||||||||    
T  25350614 tatgcgtccttcgttctcaaattta 25350590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 155
Target Start/End: Complemental strand, 25356408 - 25356284
Alignment:
Q  31 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatactatcttttatgccatgttttagaccatgcatcacaaatattcggat 130  Q
    ||||||||||||||||| |||||||||| |||||||| ||||| ||||||||  ||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  25356408 catctatatttatgctgtagtacattatctatgtaataacaatgattgttatgttattttttatgtcatgccttagaccatgcatcacaaatattcggat 25356309  T
Q  131 tatgcgaccttcgttcccaaattta 155  Q
    |||||| ||||||||| ||||||||    
T  25356308 tatgcgtccttcgttctcaaattta 25356284  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 33097932 - 33097879
Alignment:
Q  161 aatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 214  Q
    |||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  33097932 aatgacaatgttccgtaatttgaacatctctcctttagagcaaattttttaaaa 33097879  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 25731043 - 25731139
Alignment:
Q  129 attatgcgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaatt 224  Q
    ||||||| |||||||||| |||||||| ||  | || ||||||   ||||||||||||||||||| |||||||||  |||||||||| |||||||||    
T  25731043 attatgcaaccttcgttctcaaatttacgaagactgacaatgtcgcgtaatttgaacatctctcctttagagcaatttttttaaaaaatacgtaatt 25731139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 33105296 - 33105358
Alignment:
Q  166 caatgttctgtaatttgaacatctctccattagagcaaattttt-aaaaagtacgtaattcaa 227  Q
    |||||||| ||||||||||||||||||  || |||||||||||| ||||| ||||||||||||    
T  33105296 caatgttccgtaatttgaacatctctcttttggagcaaatttttaaaaaaatacgtaattcaa 33105358  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 31299417 - 31299477
Alignment:
Q  149 aaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt 209  Q
    ||||||||||  |||| |||||||| ||||||| ||||||||||| ||||| |||||||||    
T  31299417 aaatttatgaagaatgacaatgttccgtaattttaacatctctcctttagaacaaattttt 31299477  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 226
Target Start/End: Complemental strand, 25123571 - 25123459
Alignment:
Q  117 acaaatattcggattatgcgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt---aaaa 213  Q
    |||||| |||||||||||| |||||||||| ||| |||| ||  |||| |||||||| ||||||||||||||||||  || ||||||||||||   ||||    
T  25123571 acaaatgttcggattatgcaaccttcgttctcaagtttacgaagaatgacaatgttccgtaatttgaacatctctcatttggagcaaatttttttaaaaa 25123472  T
Q  214 agtacgtaattca 226  Q
    | |||||||||||    
T  25123471 aatacgtaattca 25123459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 45003783 - 45003691
Alignment:
Q  136 gaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttt-taaaaagtacgtaattcaa 227  Q
    ||||||||||| |||||||||||  || | |||| ||| ||||||||||||||| ||| ||||||||||||||  ||||| ||||||||||||    
T  45003783 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaattttaaaaaaaatacgtaattcaa 45003691  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 15084409 - 15084343
Alignment:
Q  148 caaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 214  Q
    |||||||| ||  ||| ||||||||| ||||||||||||| ||||| |||||| ||| |||||||||    
T  15084409 caaatttacgaagaatagcaatgttccgtaatttgaacatatctcctttagagtaaaattttaaaaa 15084343  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 5482954 - 5483046
Alignment:
Q  136 gaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt-aaaaagtacgtaattcaa 227  Q
    ||||||||||| |||||||||||  || | |||| ||| ||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||    
T  5482954 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaatttttaaaaaaatacgtaattcaa 5483046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 1694811 - 1694903
Alignment:
Q  136 gaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaag-tacgtaattcaa 227  Q
    ||||||||||| |||||||| ||  ||| ||||||||| || |||||||||| ||||| ||||||||| ||||| ||||| | ||||||||||    
T  1694811 gaccttcgttctcaaatttacgaagaatagcaatgttccgtgatttgaacatatctcctttagagcaatttttttaaaagatgcgtaattcaa 1694903  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 214
Target Start/End: Complemental strand, 36678851 - 36678774
Alignment:
Q  135 cgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 214  Q
    |||||||||||| |||||||| || |||| |||||||| |||||||| |||||||||   |||||| |||||||||||||    
T  36678851 cgaccttcgttctcaaatttacgaaaaatagcaatgttttgtaatttaaacatctct--tttagagtaaatttttaaaaa 36678774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 1967520 - 1967467
Alignment:
Q  161 aatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 214  Q
    |||| |||||||| ||||||||||||| ||||  ||| ||||||||||||||||    
T  1967520 aatgacaatgttccgtaatttgaacatttctcttttaaagcaaatttttaaaaa 1967467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 29693301 - 29693400
Alignment:
Q  129 attatgcgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaattcaa 227  Q
    ||||||| |||||||||| |||||||| ||  |||||||||||   ||||||||||||||||| | ||||| |||| |||||||||| ||||||||||||    
T  29693301 attatgcaaccttcgttctcaaatttacgaagaatggcaatgtcgcgtaatttgaacatctcttctttagaacaaattttttaaaaaatacgtaattcaa 29693400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 52037514 - 52037420
Alignment:
Q  134 gcgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaattcaa 227  Q
    ||||||||||||| |||| ||| ||  ||| ||||||||| ||||||||||||||||||| |||||| ||  |||||||||| ||| ||||||||    
T  52037514 gcgaccttcgttctcaaaattacgaagaatagcaatgttccgtaatttgaacatctctcctttagaggaatttttttaaaaaatacataattcaa 52037420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 13624230 - 13624309
Alignment:
Q  134 gcgaccttcgttcccaaatttatgagaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 214  Q
    ||||||||||||| |||| ||| ||  ||| | ||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  13624230 gcgaccttcgttctcaaaattacgaagaataggaatgttccgtaatttgaacatctctcctttagag-aaatttttaaaaa 13624309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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