View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1527_low_22 (Length: 213)
Name: NF1527_low_22
Description: NF1527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1527_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 24 - 195
Target Start/End: Original strand, 54273740 - 54273911
Alignment:
| Q |
24 |
atggaaatggtctggcccaattggtactactgtagcattgaacaggtgaaataattgcagacacacggtgttaagtaggcacccaagccaagtatagtaa |
123 |
Q |
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| T |
54273740 |
atggaaatggtttggcccaattggtactactgtagcattgaacaggtgaaataattgcaaacacacggtgttaagtatgcacccaagccaagtatagtaa |
54273839 |
T |
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| Q |
124 |
atgattgtagttggatgaaatgggaaatagctaggctcctataggagtaggatagaaaatgtagaactgtac |
195 |
Q |
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| T |
54273840 |
atgattgtagttggatgaaatgggaaatagctaggctcctataggagtaggatagaaaatgtagaactgtac |
54273911 |
T |
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