View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1527_low_4 (Length: 408)
Name: NF1527_low_4
Description: NF1527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1527_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 3 - 393
Target Start/End: Complemental strand, 29253064 - 29252674
Alignment:
| Q |
3 |
aggagaagcaaaggcaaaaaagagaagaaaatgtacgaagagggtgataattgggaagctaaaatccatgttggttttgtgtgtgcttgcccacatttat |
102 |
Q |
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| T |
29253064 |
aggacaagccaaggcaaaaaagagaagaaaatgtacaaagagggtgataattgggaagctaaaatccatgttggttttgtgtgtgcttgcccacatttat |
29252965 |
T |
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| Q |
103 |
gttgtcttcctgcattaccagaacaaatttgcttattcttaaagtttggtttgcttgaaaacaatagaatgaccattgtcacaacctaaattcttagggt |
202 |
Q |
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| T |
29252964 |
gttgtcttcctgcattaccagaacaaatttgcttattcttaaagtttggtttgcttgaaaacagtagaatgaccattgtcacaacctaaattcttagggt |
29252865 |
T |
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| Q |
203 |
ttgcttgcaaataataaagtggtcaacaaatttatttaaataagagaaaacatgggaaaacacttgaatggnnnnnnnnnnnntacagtattttaaacaa |
302 |
Q |
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| T |
29252864 |
ttgcttgcaaataataaagtggtcaacaaatttatttaaataagagaaaacatgggaaaacacttgaatgcaaaaacaaaaaatacagtattttaaacaa |
29252765 |
T |
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| Q |
303 |
tattttgagtttgagtttttccccctattttaagcaatagttgaccaaaaaattactactattttttaataaatcttatgatgatcaaact |
393 |
Q |
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| T |
29252764 |
tattttgagtttgagtttttccccctattttatccaatagttgaccaaaaaattactactattttttaataaatcttatgatgatcaaact |
29252674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 29222716 - 29222611
Alignment:
| Q |
49 |
ataattgggaagctaaaatccatgttggttttgtgtgtgcttgcccacatttatgttgtcttcctgcattaccagaacaaatttgcttattcttaaagtt |
148 |
Q |
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| T |
29222716 |
ataattgagaagctaaaatccatgttggttttgtgtgtgcttgtccacatttgtgttgtcttcctgcattaacaaaacaaatttgcatattcttagattt |
29222617 |
T |
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| Q |
149 |
tggttt |
154 |
Q |
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|||||| |
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| T |
29222616 |
tggttt |
29222611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 26919471 - 26919375
Alignment:
| Q |
45 |
ggtgataattgggaagctaaaatccatgttggttttgtgtgtgcttgcccacatttatgttgtcttcctgcattaccagaacaaatttgcttattct |
141 |
Q |
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| T |
26919471 |
ggtgataattggaaagctaaaatccgtgtgggttttttgtgttcttgtacacgtttgtgttgtcttcctgcattaacaaaacaaatttgtttattct |
26919375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 29215612 - 29215743
Alignment:
| Q |
24 |
gagaagaaaatgtacgaagagggtgataattgggaagctaaaatccatgttggt-tttgtgtgtgcttgcccacatttatgttgtcttcctgcattacca |
122 |
Q |
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|||||||||||| | || ||||| ||||| |||| || ||||||||||||| || ||||||||| || |||||||| |||||||||| ||||| | || |
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| T |
29215612 |
gagaagaaaatgaaggaggagggagataactggggagttaaaatccatgtttgtgtttgtgtgtttttctccacatttgtgttgtcttcttgcatcaaca |
29215711 |
T |
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| Q |
123 |
gaacaaatttgcttattcttaaagtttggttt |
154 |
Q |
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|||| ||||| | |||||| | |||||||| |
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| T |
29215712 |
aaacacatttgagtgttcttatattttggttt |
29215743 |
T |
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