View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1527_low_6 (Length: 355)
Name: NF1527_low_6
Description: NF1527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1527_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 44 - 292
Target Start/End: Original strand, 19795321 - 19795565
Alignment:
| Q |
44 |
cacagaagctatcaccaagggaagtttgtgcatattggtaaaatagatgggttaccataagagatgtcaatgtaattttaatataaatttactgttcata |
143 |
Q |
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| T |
19795321 |
cacagaagctatcaccaagggaagtttgtgcatattggtaaaatagatgggttactataagagatgtcaatgtaatttttctataaatttactgttcata |
19795420 |
T |
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| Q |
144 |
tattatgacagaactttattatattaattgatttggcnnnnnnnnnnnnagaaaatttatttggctacacatatctgcnnnnnnnnnnnnngctgtctaa |
243 |
Q |
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| T |
19795421 |
tataatgacagaactttattatattaattgatttggc----ttttttttagaaaatttatttggctacacatatctgcaaaaaataaaaaagctgtctaa |
19795516 |
T |
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| Q |
244 |
aataatcgagttgtcttcaaatcctgaagtttgagtaacatattcttct |
292 |
Q |
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| T |
19795517 |
aataatcgagttgtcttcaaatcctggagtttgagtaacatatacttct |
19795565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 19795586 - 19795646
Alignment:
| Q |
286 |
ttcttctaactgcagtgccttgcaatctttccttttcaactccttgaatgtcaccctatgc |
346 |
Q |
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| T |
19795586 |
ttcttctacctgcagtgccttgcaatctttccttttcaactccttgaatgtcaccctatgc |
19795646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19794346 - 19794396
Alignment:
| Q |
1 |
tgttatatccaatatggaaaaagcataattttgatggaagttacacagaag |
51 |
Q |
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| T |
19794346 |
tgttatatccaatatggaaaaagcataattttgatggaagttacacagaag |
19794396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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