View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1527_low_7 (Length: 344)

Name: NF1527_low_7
Description: NF1527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1527_low_7
NF1527_low_7
[»] chr2 (7 HSPs)
chr2 (13-207)||(11169231-11169425)
chr2 (258-328)||(11169117-11169187)
chr2 (72-155)||(41320020-41320103)
chr2 (79-164)||(41320744-41320829)
chr2 (79-155)||(13545331-13545407)
chr2 (72-155)||(13544609-13544692)
chr2 (15-57)||(11170456-11170498)
[»] chr1 (4 HSPs)
chr1 (72-155)||(17238433-17238516)
chr1 (72-153)||(6632042-6632123)
chr1 (72-155)||(17237716-17237799)
chr1 (72-155)||(6631327-6631410)
[»] chr3 (4 HSPs)
chr3 (72-164)||(16674256-16674348)
chr3 (72-155)||(52362651-52362734)
chr3 (79-138)||(16673558-16673617)
chr3 (299-327)||(54584051-54584079)
[»] chr5 (3 HSPs)
chr5 (72-155)||(41516471-41516554)
chr5 (119-155)||(8469814-8469850)
chr5 (299-327)||(27679516-27679544)
[»] chr4 (1 HSPs)
chr4 (294-327)||(26008059-26008092)
[»] chr8 (1 HSPs)
chr8 (299-327)||(1200360-1200388)
[»] chr7 (1 HSPs)
chr7 (299-327)||(2962741-2962769)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 11169425 - 11169231
Alignment:
Q  13 aaaatcataatttgatatgcttttgaaccgggaagaagaagaaaatcacttctccttcaaaaactaacatttaaaccattaaattaaaatgagatgaaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  11169425 aaaatcataatttgatatgcttttgaaccgggaagaagaagaaaatcacttctccttcaaaaattaacatttaaaccattagattaaaatgagatgaaag 11169326  T
Q  113 gtgaaaatttagagtaaatctataaatttactcttggagtcaatatctctcttatatatatgcgcacataaataattggtacaaacaaagctcta 207  Q
    ||| | |||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||    
T  11169325 gtggagatttagagtaaatctataaacttattcttggagtcaatatctctcctatatatatgtgcacacaaataattggtacaaacaaagctcta 11169231  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 11169187 - 11169117
Alignment:
Q  258 ccttttttactcttattttgtggtgtccagagatcgaacggaccttgcatatattatgcattatctttact 328  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||    
T  11169187 ccttttttactcttattttgtggtgttcagagatcgaacagaccttgcatatattatgcattgtctttact 11169117  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 41320103 - 41320020
Alignment:
Q  72 aaaactaacatttaaaccattaaattaaaatgagatgaaaggtgaaaatttagagtaaatctataaatttactcttggagtcaa 155  Q
    |||||| |||||||| |||||| |||||||| |||||||||||| | |||| |||||| |||||||| ||||||||||||||||    
T  41320103 aaaactcacatttaagccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactcttggagtcaa 41320020  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 41320744 - 41320829
Alignment:
Q  79 acatttaaaccattaaattaaaatgagatgaaaggtgaaaatttagagtaaatctataaatttactcttggagtcaatatctctct 164  Q
    ||||||||||||||| |||||||| |||||||||||| | |||| |||||| |||||||| ||||| |||||||||| || |||||    
T  41320744 acatttaaaccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactattggagtcaaaatatctct 41320829  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 13545331 - 13545407
Alignment:
Q  79 acatttaaaccattaaattaaaatgagatgaaaggtgaaaatttagagtaaatctataaatttactcttggagtcaa 155  Q
    |||||||| |||||| |||||||| |||||||||||| | |||| |||||| |||||||| ||||||||||||||||    
T  13545331 acatttaagccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactcttggagtcaa 13545407  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 13544692 - 13544609
Alignment:
Q  72 aaaactaacatttaaaccattaaattaaaatgagatgaaaggtgaaaatttagagtaaatctataaatttactcttggagtcaa 155  Q
    |||||| |||||||||| |||| |||||||| |||||||||||| | |||| || ||| |||||||| ||||||||| ||||||    
T  13544692 aaaactcacatttaaactattagattaaaataagatgaaaggtggagatttggaataagtctataaacttactcttgaagtcaa 13544609  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 11170498 - 11170456
Alignment:
Q  15 aatcataatttgatatgcttttgaaccgggaagaagaagaaaa 57  Q
    |||||||| ||| |||| |||||||||||||||||||||||||    
T  11170498 aatcataaattggtatgattttgaaccgggaagaagaagaaaa 11170456  T

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Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 17238433 - 17238516
Alignment:
Q  72 aaaactaacatttaaaccattaaattaaaatgagatgaaaggtgaaaatttagagtaaatctataaatttactcttggagtcaa 155  Q
    |||||| ||||||||||||||| |||||||| |||||||||||| | |||| |||||| |||||||| ||||||||||||||||    
T  17238433 aaaactcacatttaaaccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactcttggagtcaa 17238516  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 6632042 - 6632123
Alignment:
Q  72 aaaactaacatttaaaccattaaattaaaatgagatgaaaggtgaaaatttagagtaaatctataaatttactcttggagtc 153  Q
    |||||| ||||||||||||||| |||||||| |||||||||||| | |||| |||||| |||||||| ||||||||||||||    
T  6632042 aaaactcacatttaaaccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactcttggagtc 6632123  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 17237799 - 17237716
Alignment:
Q  72 aaaactaacatttaaaccattaaattaaaatgagatgaaaggtgaaaatttagagtaaatctataaatttactcttggagtcaa 155  Q
    |||||| ||||||||||||||| |||||||| |||||||||||| | |||| |||||| |||||||| ||||||||| ||||||    
T  17237799 aaaactcacatttaaaccattagattaaaataagatgaaaggtggatatttggagtaagtctataaacttactcttgcagtcaa 17237716  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 6631410 - 6631327
Alignment:
Q  72 aaaactaacatttaaaccattaaattaaaatgagatgaaaggtgaaaatttagagtaaatctataaatttactcttggagtcaa 155  Q
    |||||| |||||||| |||||| |||||||| |||||||||||| | |||| |||||| |||||||| |||| |||||||||||    
T  6631410 aaaactcacatttaagccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttacccttggagtcaa 6631327  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 16674256 - 16674348
Alignment:
Q  72 aaaactaacatttaaaccattaaattaaaatgagatgaaaggtgaaaatttagagtaaatctataaatttactcttggagtcaatatctctct 164  Q
    |||||| |||||||| |||||| |||||||| |||||||||||| | |||| |||||| |||||||| |||||||| ||||||| || |||||    
T  16674256 aaaactcacatttaagccattagattaaaataagatgaaaggtgtagatttggagtaagtctataaacttactctttgagtcaaaatatctct 16674348  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 52362734 - 52362651
Alignment:
Q  72 aaaactaacatttaaaccattaaattaaaatgagatgaaaggtgaaaatttagagtaaatctataaatttactcttggagtcaa 155  Q
    |||||| |||||||| |||||| |||||||| |||||||||||| | |||| |||||  |||||||| ||||||||||||||||    
T  52362734 aaaactcacatttaagccattagattaaaataagatgaaaggtggagatttggagtaggtctataaacttactcttggagtcaa 52362651  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 16673617 - 16673558
Alignment:
Q  79 acatttaaaccattaaattaaaatgagatgaaaggtgaaaatttagagtaaatctataaa 138  Q
    ||||||||||||||| |||||||| |||||||||||| | |||| |||||| ||||||||    
T  16673617 acatttaaaccattagattaaaataagatgaaaggtggatattttgagtaagtctataaa 16673558  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 327
Target Start/End: Complemental strand, 54584079 - 54584051
Alignment:
Q  299 accttgcatatattatgcattatctttac 327  Q
    |||||||||||||||||||||||||||||    
T  54584079 accttgcatatattatgcattatctttac 54584051  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 41516554 - 41516471
Alignment:
Q  72 aaaactaacatttaaaccattaaattaaaatgagatgaaaggtgaaaatttagagtaaatctataaatttactcttggagtcaa 155  Q
    |||||| |||||||||| |||| |||||||| |||||||||||| | |||| |||||| ||||||||| ||||||| |||||||    
T  41516554 aaaactcacatttaaactattagattaaaataagatgaaaggtggagatttggagtaagtctataaatatactcttagagtcaa 41516471  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 8469814 - 8469850
Alignment:
Q  119 atttagagtaaatctataaatttactcttggagtcaa 155  Q
    ||||||||||| |||||||||||||||||||||||||    
T  8469814 atttagagtaagtctataaatttactcttggagtcaa 8469850  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 327
Target Start/End: Complemental strand, 27679544 - 27679516
Alignment:
Q  299 accttgcatatattatgcattatctttac 327  Q
    |||||||||||||||||||||||||||||    
T  27679544 accttgcatatattatgcattatctttac 27679516  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 327
Target Start/End: Original strand, 26008059 - 26008092
Alignment:
Q  294 aacggaccttgcatatattatgcattatctttac 327  Q
    |||||||||||||||||||||||||| |||||||    
T  26008059 aacggaccttgcatatattatgcattgtctttac 26008092  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 327
Target Start/End: Original strand, 1200360 - 1200388
Alignment:
Q  299 accttgcatatattatgcattatctttac 327  Q
    |||||||||||||||||||||||||||||    
T  1200360 accttgcatatattatgcattatctttac 1200388  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 327
Target Start/End: Original strand, 2962741 - 2962769
Alignment:
Q  299 accttgcatatattatgcattatctttac 327  Q
    |||||||||||||||||||||||||||||    
T  2962741 accttgcatatattatgcattatctttac 2962769  T

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