View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1527_low_9 (Length: 300)
Name: NF1527_low_9
Description: NF1527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1527_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 16062646 - 16062374
Alignment:
| Q |
12 |
atgaacaagagctcaaattaaaatttcatacattcaataggaaagttgaagaaaattgcagtggttcgaagagccaaatttgcaatgattaggtattagt |
111 |
Q |
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| T |
16062646 |
atgaacaagagttcaaattaaaatttcatacattcaataggaaagctgaagaaaattgcaatggttcgaagagccaaatttgcaatgattaggtattagt |
16062547 |
T |
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| Q |
112 |
aaatccaaaaagtccattggagatctataaaatgtcggtcgtcaataatgatgattctttcttcgcaaagaagatcttaggcgaattacagtcatgtttt |
211 |
Q |
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| T |
16062546 |
aaatccaaaaagtccattggagatctatacaatgtcggtcgtcaataatgatgattctttcttcgcaaagaagatcttaggcgaattacagtcatgtttt |
16062447 |
T |
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| Q |
212 |
ttcggtaatgatcacaaagaaattaaggcttctcaatggagatgctctcctaaccatggttaatgatcataat |
284 |
Q |
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| T |
16062446 |
ttcggtaatgatcacaaagaaattaaggtttctcaatggagatgctctcctaaccatggttaatgatcataat |
16062374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 16074041 - 16073769
Alignment:
| Q |
12 |
atgaacaagagctcaaattaaaatttcatacattcaataggaaagttgaagaaaattgcagtggttcgaagagccaaatttgcaatgattaggtattagt |
111 |
Q |
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| T |
16074041 |
atgaacaagagctcaaattaaaatttcatacattcaataggaaagctgaagaaaattacaatggttcgaagagccaaatttgtaatgattaggtattagt |
16073942 |
T |
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| Q |
112 |
aaatccaaaaagtccattggagatctataaaatgtcggtcgtcaataatgatgattctttcttcgcaaagaagatcttaggcgaattacagtcatgtttt |
211 |
Q |
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| T |
16073941 |
aaatccaaagagtccattggaggtctatacaatgtcggtcgtcaataatgatgattctttcttcgcaaaaaagatcttaggcgaattacaatcatgtttt |
16073842 |
T |
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| Q |
212 |
ttcggtaatgatcacaaagaaattaaggcttctcaatggagatgctctcctaaccatggttaatgatcataat |
284 |
Q |
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| T |
16073841 |
ttcggtaatgatcacaaagaaattaaggcttctcagtgtagatgctctcctaaccatggttaatgatcataat |
16073769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 16068856 - 16068685
Alignment:
| Q |
12 |
atgaacaagagctcaaattaaaatttcatacattcaataggaaagttgaagaaaattgcagtggttcgaagagccaaatttgcaatgattaggtattagt |
111 |
Q |
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| T |
16068856 |
atgaacaatagctcaaattaaaaattcgtacattcaatacaaaagctgaggaaagttgcagtggttcga-gaggcaaatttgcaatgattaggtattagt |
16068758 |
T |
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| Q |
112 |
aaatccaaaaagtcca---ttggagatctataaaatgtcggtcgtcaataatgatgattctttcttcgcaaaga |
182 |
Q |
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| T |
16068757 |
aaatccaaaaagttcatatttatagatctatacagtattggtcgtcattaatgatga-tctttattcgcaaaga |
16068685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 16095093 - 16094930
Alignment:
| Q |
19 |
agagctcaaattaaaatttcatacattcaataggaaagttgaagaaaattgcagtggttcgaagagccaaatttgcaatgattaggtattagtaaatcca |
118 |
Q |
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|||| |||||||||| ||| ||||||||| | |||||||||| ||| ||||| ||| |||||| | ||||||||||||||||| || ||||||| | |
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| T |
16095093 |
agagttcaaattaaattttg-tacattcaaaacgaaagttgaataaagttgcaaaagttgaaagagctatatttgcaatgattaggtgttggtaaatcta |
16094995 |
T |
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| Q |
119 |
aaaagtccattggagatctataaaatgtcggtcgtcaataatgatgattctttcttcgcaaagaa |
183 |
Q |
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| T |
16094994 |
aaatttatataggagatctatagagtgtcgatcgtcaataatgattattctttctttgcagagaa |
16094930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 33500621 - 33500584
Alignment:
| Q |
159 |
atgatgattctttcttcgcaaagaagatcttaggcgaa |
196 |
Q |
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| T |
33500621 |
atgatgattctttcttcgcaaagaacatctttggcgaa |
33500584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 33488068 - 33487992
Alignment:
| Q |
120 |
aaagtccattggagatctataaaatgtcggtcgtcaataatgatgattctttcttcgcaaagaagatcttaggcgaa |
196 |
Q |
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| T |
33488068 |
aaagtgcattggagatcaatccagtgtcggtcatcaatgatgttgatcctttctttgcaaagaacatctcaggcgaa |
33487992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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