View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15280_high_13 (Length: 421)
Name: NF15280_high_13
Description: NF15280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15280_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 32023136 - 32023544
Alignment:
| Q |
18 |
gatcattatttaagtgagagaactcgtatattcattgcatgaacatttcaggttaaaatgttatatataagtcacgcttgcccaaaattcaatgcgatga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32023136 |
gatcattatttaagtgagagaactcgtatattcattgcatgaacatttcaggttaacatgttatatataagtcacgcttgcccaaaattcaatgcgatga |
32023235 |
T |
|
| Q |
118 |
tttatcatattcc-ttacgaccctacaaattaaagcttagttttaattcttgaattttgattttgtttgcgaatgatggttagtatttgacttgttaact |
216 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32023236 |
tttatcatattcccttacgaccctacaaattaaagcttagttttaattcttgaattttggttttgtttgcgaatgatggttagtatttgacttgttaact |
32023335 |
T |
|
| Q |
217 |
atatggtaaaatgaaaatatgaagcatgttaaagatgggaatggttgatgtgccatgatggtttatggatggcaatataataagggtggaaaggggcc-- |
314 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32023336 |
atatggtaaaatgaaaataaaaagcatgttaaagatgggaatggttgatgtgccatgatggtttatggatggcaatataataagggtggaaaggggccct |
32023435 |
T |
|
| Q |
315 |
--------------ctctctctctcatagtcctctttgtgttaagttaaaccttttggttgagttttaaaggaaaaactcctggataacttatgtttgtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
32023436 |
ctctctctctctctctctctctctcatagtcctctttgtgataagttaaaccttttggttgagttttaaacgaaaaactcctgaataacttatgtttgtt |
32023535 |
T |
|
| Q |
401 |
ggatatttt |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
32023536 |
ggatatttt |
32023544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 32031655 - 32032063
Alignment:
| Q |
18 |
gatcattatttaagtgagagaactcgtatattcattgcatgaacatttcaggttaaaatgttatatataagtcacgcttgcccaaaattcaatgcgatga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32031655 |
gatcattatttaagtgagagaactcgtatattcattgcatgaacatttcaggttaacatgttatatataagtcacgcttgcccaaaattcaatgcgatga |
32031754 |
T |
|
| Q |
118 |
tttatcatattcc-ttacgaccctacaaattaaagcttagttttaattcttgaattttgattttgtttgcgaatgatggttagtatttgacttgttaact |
216 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32031755 |
tttatcatattcccttacgaccctacaaattaaagcttagttttaattcttgaattttggttttgtttgcgaatgatggttagtatttgacttgttaact |
32031854 |
T |
|
| Q |
217 |
atatggtaaaatgaaaatatgaagcatgttaaagatgggaatggttgatgtgccatgatggtttatggatggcaatataataagggtggaaaggggcc-- |
314 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32031855 |
atatggtataatgaaaataataagcatgttaaagatgggaatggttgatgtgccatgatggtttatggatggcaatataataagggtggaaaggggccct |
32031954 |
T |
|
| Q |
315 |
--------------ctctctctctcatagtcctctttgtgttaagttaaaccttttggttgagttttaaaggaaaaactcctggataacttatgtttgtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
32031955 |
ctctctctctctctctctctctctcatagtcctctttgtgataagttaaaccttttggttgagttttaaacgaaaaactcctgaataacttatgtttgtt |
32032054 |
T |
|
| Q |
401 |
ggatatttt |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
32032055 |
ggatatttt |
32032063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University