View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15280_high_21 (Length: 284)

Name: NF15280_high_21
Description: NF15280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15280_high_21
NF15280_high_21
[»] chr7 (3 HSPs)
chr7 (7-263)||(43308794-43309050)
chr7 (57-153)||(43831176-43831272)
chr7 (191-259)||(43831027-43831095)
[»] chr1 (2 HSPs)
chr1 (171-266)||(21795555-21795650)
chr1 (7-103)||(21795462-21795558)
[»] chr8 (2 HSPs)
chr8 (57-153)||(39309882-39309978)
chr8 (194-245)||(39309742-39309793)
[»] chr4 (2 HSPs)
chr4 (190-262)||(40171093-40171165)
chr4 (19-117)||(40170824-40170922)
[»] chr3 (1 HSPs)
chr3 (190-262)||(3670417-3670489)


Alignment Details
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 43309050 - 43308794
Alignment:
Q  7 aggagtagcaaaggaaaggtggttggtggtggttttgcagacggatgtctatggggttcatgtgatgtttaggttgaagggtgtcttgtgtttgattatg 106  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43309050 aggagaagcaagggaaaggtggttggtggtggttttgcagacggaggtctatggggttcatgtgatgtttaggttgatgggtgtcttgtgtttgattatg 43308951  T
Q  107 tacaaattttgcaaaaattcaattaatccccaaatttgtagatctgannnnnnnnnnnnnnnnngattggtgttgttggtgacgtgttggtggtgaggag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||  |||||||||||||||||||||    
T  43308950 tacaaattttgcaaaaattcaattaatccccaaatttgtagatctgatttttactttttcttttgattggtgttgttaatgacgtgttggtggtgaggag 43308851  T
Q  207 atggaagaaggataaggatatggtggtgttggatgaagagatgatgaacaagaagaa 263  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43308850 atgaaagaaggataaggatatggtggtgttggatgaagagatgatgaacaagaagaa 43308794  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 43831272 - 43831176
Alignment:
Q  57 atggggttcatgtgatgtttaggttgaagggtgtcttgtgtttgattatgtacaaattttgcaaaaattcaattaatccccaaatttgtagatctga 153  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| ||| ||||||||||||||||||||||||    
T  43831272 atggggttcatgtcatgtttaggttgatgggtgtcttgtgtttgactatgttcaaattttgcagaaatccaactaatccccaaatttgtagatctga 43831176  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 43831095 - 43831027
Alignment:
Q  191 tgttggtggtgaggagatggaagaaggataaggatatggtggtgttggatgaagagatgatgaacaaga 259  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43831095 tgttggtagtgaggaaatggaagaaggataaggatatggtggtgttggatgaagagatgatgaacaaga 43831027  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 21795555 - 21795650
Alignment:
Q  171 gattggtgttgttggtgacgtgttggtggtgaggagatggaagaaggataaggatatggtggtgttggatgaagagatgatgaacaagaagaagag 266  Q
    ||||| ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21795555 gattgttgttgttagtgatgtgttggtagtgaggagatggaagaaggataaggatatggtggtgttggatgaagagatgatgaacaagaagaagag 21795650  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 21795462 - 21795558
Alignment:
Q  7 aggagtagcaaaggaaaggtggttggtggtggttttgcagacggatgtctatggggttcatgtgatgtttaggttgaagggtgtcttgtgtttgatt 103  Q
    ||||| ||||| |||||||||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  21795462 aggagaagcaagggaaaggtggttggtggtggtttttcaaacggaggtctatgggattcatgtgatgtttaggttgatgggtgtcttgtgtttgatt 21795558  T

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Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 39309978 - 39309882
Alignment:
Q  57 atggggttcatgtgatgtttaggttgaagggtgtcttgtgtttgattatgtacaaattttgcaaaaattcaattaatccccaaatttgtagatctga 153  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||| |||| |||||||||||||||||||    
T  39309978 atggggttcatgtaatgtttaggttgatgggtgtcttgtgtttgattatgttcaaattttgcagaaatccaactaattcccaaatttgtagatctga 39309882  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 39309793 - 39309742
Alignment:
Q  194 tggtggtgaggagatggaagaaggataaggatatggtggtgttggatgaaga 245  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  39309793 tggtagtgaggaaatggaagaaggataaggatatggtggtgttggatgaaga 39309742  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 40171093 - 40171165
Alignment:
Q  190 gtgttggtggtgaggagatggaagaaggataaggatatggtggtgttggatgaagagatgatgaacaagaaga 262  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40171093 gtgttggtagtgaggagatggaagaaggataatgatatggtggtgttggatgaagagatgatgaacaagaaga 40171165  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 40170824 - 40170922
Alignment:
Q  19 ggaaaggtggttggtggtggttttgcagacggatgtctatggggttcatgtgatgtttaggttgaagggtgtcttgtgtttgattatgtacaaattttg 117  Q
    ||||| ||||||||||||||||||  | | ||| ||| |||||||||||||| ||||  |||||| |||||||||||||||||||| || |||||||||    
T  40170824 ggaaatgtggttggtggtggtttttaaaatggaggtcgatggggttcatgtggtgttgtggttgatgggtgtcttgtgtttgattaggttcaaattttg 40170922  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 3670417 - 3670489
Alignment:
Q  190 gtgttggtggtgaggagatggaagaaggataaggatatggtggtgttggatgaagagatgatgaacaagaaga 262  Q
    ||||| || |||||||||| |||||| |||||||||||| || |||||| ||||||||||||||| |||||||    
T  3670417 gtgttcgtagtgaggagatcgaagaaagataaggatatgatgatgttggctgaagagatgatgaagaagaaga 3670489  T

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