View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15280_high_26 (Length: 248)
Name: NF15280_high_26
Description: NF15280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15280_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 37062136 - 37062353
Alignment:
| Q |
12 |
tgagaagaacaaggataagaattattcgaattccatgtgtttgagttggtttcagagagttcagattgctcatgatgtagctgatgcacttaattacctt |
111 |
Q |
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| T |
37062136 |
tgagaagaacaaggataagaattattcgaattccatgtgtttgagttggtttcagagagttcagattgctcatgatgtagctgatgcacttaattacctt |
37062235 |
T |
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| Q |
112 |
cataattatgctaatccacctcatgttcataagaatttgaaaagtggtaatattcttttagatggaaaatttagaggtaaagtttcaaattttgggttgg |
211 |
Q |
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| T |
37062236 |
cataattatgctaatccacctcatgttcataagaatttgaaaagtggtaatattcttttagatggaaaatttagaggtaaagtttcaaattttgggttgg |
37062335 |
T |
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| Q |
212 |
caagagttatggagaatg |
229 |
Q |
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| T |
37062336 |
caagagttatggagaatg |
37062353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 36262892 - 36262741
Alignment:
| Q |
67 |
agagttcagattgctcatgatgtagctgatgcacttaattaccttcataattatgctaatccacctcatgttcataagaatttgaaaagtggtaatattc |
166 |
Q |
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| T |
36262892 |
agagttcagattgctcaggatgtggcggatgctttgaattaccttcacaactatgtcaaccctccacatatccacaagaatttgaaaagtgacaatgtgc |
36262793 |
T |
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| Q |
167 |
ttttagatggaaaatttagaggtaaagtttcaaattttgggttggcaagagt |
218 |
Q |
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| T |
36262792 |
ttttggatggaaattttagaggtaaactttgtaactttggattagcaagagt |
36262741 |
T |
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