View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15280_high_8 (Length: 527)

Name: NF15280_high_8
Description: NF15280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15280_high_8
NF15280_high_8
[»] chr6 (3 HSPs)
chr6 (29-513)||(16872052-16872534)
chr6 (408-500)||(16653577-16653669)
chr6 (426-480)||(16570245-16570299)
[»] chr4 (2 HSPs)
chr4 (85-222)||(36286373-36286510)
chr4 (94-152)||(40823616-40823674)
[»] chr7 (6 HSPs)
chr7 (100-153)||(19939357-19939410)
chr7 (100-153)||(19970496-19970549)
chr7 (84-152)||(20231783-20231851)
chr7 (93-152)||(20243855-20243914)
chr7 (94-149)||(20005149-20005204)
chr7 (93-152)||(20264242-20264301)
[»] chr3 (1 HSPs)
chr3 (108-153)||(1091486-1091531)


Alignment Details
Target: chr6 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 29 - 513
Target Start/End: Original strand, 16872052 - 16872534
Alignment:
Q  29 aaataataataaaacaaggagctatgatgaggggcttacaaatcctataattaatgtcaaaaatacttgtgtttcttcttccactaacaatctctagtag 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  16872052 aaataataataaaacaaggagctatgatgaggggcttacaaatcctataattaatgtcaaaaatacttgt--ttcttcttccactaacaatctctagtag 16872149  T
Q  129 taatactccaaagctaaagacatcatatagctaagaaacaatttcttgcattgcgtattcgggagatatgcagtgactacatttaaagctcaaacgtaat 228  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16872150 taatactccgaagctaaagacatcatatagctaagaaacaatttcttgcattgcgtattcgggagatatgcagtgactacatttaaagctcaaacgtaat 16872249  T
Q  229 gagctcttcgtatattttacaatctttttggtgaaagagaaaggtgtgtatactttctatgttccaacaattcttgtcatatatccttcatttcactgtc 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16872250 gagctcttcgtatattttacaatctttttggtgaaagagaaaggtgtgtatactttctatgttccaacaattcttgtcatatatccttcatttcactgtc 16872349  T
Q  329 tccaaatattttagccattccaaaacctgatattttcgcataaagaggaagccgtatactttccttcatgtttctatggctcaattctagaataatcctc 428  Q
    |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||    
T  16872350 tccaaatattttagccattcgaaaacctgatattttcggatacagaggaagccgtgtactttccttcatgtttctattgctcaattctagcataatcctc 16872449  T
Q  429 ttctgtgtccattgcttgttcccataatctcagtgtcttctatctacatttcatttaggattcgaagaatagttcatccatttct 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16872450 ttctgtgtccattgcttgttcccataatctcagtgtcttctatctacatttcatctaggattcgaagaatagttcatccatttct 16872534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 408 - 500
Target Start/End: Complemental strand, 16653669 - 16653577
Alignment:
Q  408 ctcaattctagaataatcctcttctgtgtccattgcttgttcccataatctcagtgtcttctatctacatttcatttaggattcgaagaatag 500  Q
    ||||||||| ||| |||||||||| || ||| |||||||||||||||||||||||||| ||||  |||||||| |  ||||||||||| ||||    
T  16653669 ctcaattcttgaagaatcctcttcggtttccgttgcttgttcccataatctcagtgtcctctacgtacatttcctcgaggattcgaagcatag 16653577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 480
Target Start/End: Original strand, 16570245 - 16570299
Alignment:
Q  426 ctcttctgtgtccattgcttgttcccataatctcagtgtcttctatctacatttc 480  Q
    ||||||||| || |||||||||| ||||||||||||| || |||||||| |||||    
T  16570245 ctcttctgtttcaattgcttgtttccataatctcagtttcctctatctagatttc 16570299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 36286510 - 36286373
Alignment:
Q  85 tcaaaaatacttgtgtttcttcttccactaacaatctctagtagtaatactccaaagctaaagacatcatatagctaagaaacaatttcttgcattgcgt 184  Q
    ||||||| ||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||| || |||  ||||||||| ||||||||||||    
T  36286510 tcaaaaagacttgtgtttcttctaccaaaaacaatctctagtagtaatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgt 36286411  T
Q  185 attcgggagatatgcagtgactacatttaaagctcaaa 222  Q
    |||| ||||||||| || |||| ||||||||| |||||    
T  36286410 attctggagatatgtagcgactgcatttaaaggtcaaa 36286373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 40823616 - 40823674
Alignment:
Q  94 cttgtgtttcttcttccactaacaatctctagtagtaatactccaaagctaaagacatc 152  Q
    |||| ||||||||| ||||||| |||||||||||  || || |||||||||||||||||    
T  40823616 cttgagtttcttctcccactaataatctctagtatcaaaacaccaaagctaaagacatc 40823674  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 19939410 - 19939357
Alignment:
Q  100 tttcttcttccactaacaatctctagtagtaatactccaaagctaaagacatca 153  Q
    |||||||||||||||| |||||| || ||||| |||||||||||||||||||||    
T  19939410 tttcttcttccactaataatctcaagaagtaaaactccaaagctaaagacatca 19939357  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 19970549 - 19970496
Alignment:
Q  100 tttcttcttccactaacaatctctagtagtaatactccaaagctaaagacatca 153  Q
    |||||||||||||||| |||||| || ||||| |||||||||||||||||||||    
T  19970549 tttcttcttccactaataatctcaagaagtaaaactccaaagctaaagacatca 19970496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 20231851 - 20231783
Alignment:
Q  84 gtcaaaaatacttgtgtttcttcttccactaacaatctctagtagtaatactccaaagctaaagacatc 152  Q
    |||| ||| ||||| ||||||||||||  |||||||||||||||| ||||| ||||||||||| |||||    
T  20231851 gtcataaaaacttgagtttcttcttccgataacaatctctagtagcaatacaccaaagctaaaaacatc 20231783  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 20243914 - 20243855
Alignment:
Q  93 acttgtgtttcttcttccactaacaatctctagtagtaatactccaaagctaaagacatc 152  Q
    ||||| ||||||||||||  |||||||||||||||| ||||| ||||||||||| |||||    
T  20243914 acttgagtttcttcttccgataacaatctctagtagcaatacaccaaagctaaaaacatc 20243855  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 20005149 - 20005204
Alignment:
Q  94 cttgtgtttcttcttccactaacaatctctagtagtaatactccaaagctaaagac 149  Q
    |||| ||||| |||||||||||||||||||| ||| || ||||||||||| |||||    
T  20005149 cttgagtttcgtcttccactaacaatctctattagcaaaactccaaagctgaagac 20005204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 20264301 - 20264242
Alignment:
Q  93 acttgtgtttcttcttccactaacaatctctagtagtaatactccaaagctaaagacatc 152  Q
    ||||| ||||||||| ||  |||||||||||||||| ||||| ||||||||||| |||||    
T  20264301 acttgagtttcttctcccgataacaatctctagtagcaatacaccaaagctaaaaacatc 20264242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 1091531 - 1091486
Alignment:
Q  108 tccactaacaatctctagtagtaatactccaaagctaaagacatca 153  Q
    |||||| ||||||||||||| |||||| ||||||||||| ||||||    
T  1091531 tccacttacaatctctagtaataatacaccaaagctaaatacatca 1091486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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