View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15280_low_1 (Length: 775)
Name: NF15280_low_1
Description: NF15280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15280_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 121 - 704
Target Start/End: Complemental strand, 19890232 - 19889640
Alignment:
| Q |
121 |
gaggagttattatcatatagtattagggaccaacctaaactgttcaatagattgtactcttttcttcactttctacttgagtcattcaaatacagtaaca |
220 |
Q |
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| T |
19890232 |
gaggagttattatcatatagtattagggaccaacctaaactgttcaatagattgtactcttttcttcactttctacttgagtcattcaaacacagtaaca |
19890133 |
T |
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| Q |
221 |
gaaacaggaagcaataacaacaaca---------tgtcccttgaagagactctaagatctctctcccttgactacctgaatctcctcatcaacggccaag |
311 |
Q |
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| T |
19890132 |
gaaacaggaagcaataacaacaacaacaacaacatgtcccttgaagagactctaagatctctctcccttgactacctgaatctcctcatcaacggccaag |
19890033 |
T |
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| Q |
312 |
ccttcagcgacgtcactttccaagttgaaggtcgtttggttcatgctcatcgctgcatcttagcagcaaggagtcttttcttcaggaaattcttttgtgg |
411 |
Q |
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| T |
19890032 |
ccttcagcgacgtcactttccaagttgaaggtcgtttggttcatgctcatcgctgcatcttagcagcaaggagtcttttcttcaggaaattcttttgtgg |
19889933 |
T |
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| Q |
412 |
gcccgacccaccttcgggactagacccaataggaggaggatcctctcgtcagccgacagtacgacctggtgtcattccagtgaactcagtcggctacgag |
511 |
Q |
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| T |
19889932 |
gcccgacccaccttcgggactagacccaataggaggaggatcctctcgtcagccgacagtacgacctggtgtcattccagtgaactcagtcggctacgag |
19889833 |
T |
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| Q |
512 |
gttttcctcctcctgttgcagtttctatacagtggacaagtttctattgttcctcagaaacatgagcctagacctaattgtggtgagagaacgtgctggc |
611 |
Q |
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| T |
19889832 |
gttttcctcctcctgttgcagtttctgtacagtggacaagtttctattgttcctcagaaacatgagcctagacctaattgtggtgagagagggtgctggc |
19889733 |
T |
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| Q |
612 |
atacgcattgtacctcagccgttgatcttgcccttgataccctagctgccgctagatactttggcgttgaacagcttgcattgctcactcagg |
704 |
Q |
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| T |
19889732 |
atacgcattgtacctcagccgttgatcttgcccttgatactctagctgccgctagatactttggagttgaacagcttgcattgctcactcagg |
19889640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 19890344 - 19890292
Alignment:
| Q |
9 |
acatcatcaacatcaatgaaaacaacacaagtatcaaacaattaaaacccaac |
61 |
Q |
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| T |
19890344 |
acatcatcaacatcaatgaaaacaacacaagtatcaaacaattaaaacccaac |
19890292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 8e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 530 - 704
Target Start/End: Original strand, 35317496 - 35317670
Alignment:
| Q |
530 |
cagtttctatacagtggacaagtttctattgttcctcagaaacatgagcctagacctaattgtggtgagagaacgtgctggcatacgcattgtacctcag |
629 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | || |||||||| |||||||| |||| |
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| T |
35317496 |
cagtttctgtacagtggacaagtttctattgttcctcagaaacatgaacctaggcctaattgtggtgaccgtggttgttggcatacacattgtacttcag |
35317595 |
T |
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| Q |
630 |
ccgttgatcttgcccttgataccctagctgccgctagatactttggcgttgaacagcttgcattgctcactcagg |
704 |
Q |
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| T |
35317596 |
ccgttgatcttgctcttgatactcttgcagccgctagatactttggagttgaacagcttgcattactcactcagg |
35317670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 244 - 439
Target Start/End: Original strand, 35317210 - 35317405
Alignment:
| Q |
244 |
catgtcccttgaagagactctaagatctctctcccttgactacctgaatctcctcatcaacggccaagccttcagcgacgtcactttccaagttgaaggt |
343 |
Q |
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| T |
35317210 |
catgtcccttgaagactcactaagatctctttctttagactacttaaaccttctcatcaacggacaagcgttcagcgacgttgttttcagcgtcgaagga |
35317309 |
T |
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| Q |
344 |
cgtttggttcatgctcatcgctgcatcttagcagcaaggagtcttttcttcaggaaattcttttgtgggcccgacccaccttcgggactagaccca |
439 |
Q |
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| T |
35317310 |
cgtttagtccacgcacacagatgcatcttagcagcaagaagtctattcttcagaaaattcttttgtgggccagacccaccttctggattagaccca |
35317405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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