View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15280_low_10 (Length: 492)
Name: NF15280_low_10
Description: NF15280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15280_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 44474767 - 44474284
Alignment:
| Q |
1 |
aaataggtaaattggcgggaggtggtgtaggcgcgtatactctagacacatttaacttaactaaccgccatttattttatttacca-------gaccaga |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
44474767 |
aaataggtaaattggcgggaggtggtgtaggcgcgtatactctagacacatttaacttaactaaccgccatttatgttatttaccaattaccagaccaga |
44474668 |
T |
|
| Q |
94 |
agaaagcatacgttgcagtatcactagccataagatcatgaccatgatcatggcatgaaattaaatgttttccctttcccttcacaatatacgattatct |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44474667 |
agaaagcatacgttgcagtatcactagccataagatcatgatcatgatcatggcatgaaattaaatgttttccctttcccttcacaatatacgattatct |
44474568 |
T |
|
| Q |
194 |
atcatttaacttcaattcgctaccttcgattgatgatttattcttcttcttcaaatcaacaaacaacttccttaatttctaagccgaaatgtggcaccgt |
293 |
Q |
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||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44474567 |
atcatttaacttcaatttgttactttcgattgatgatttattcttcttcttcaaatcaaaaaacaacttccttaatttctaagccgaaatgtggcaccgt |
44474468 |
T |
|
| Q |
294 |
ttatcatcatcatcatccaaactcaacctcagaacttgtgcttcagggttagggtttcttacacgatcattctcctctgaaccgggaaagagattcgctg |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44474467 |
ttatcatcatcatcatccaaactcaacctcagaacttgtgcttcagggttagggtttcttacacgatcattctcctctgaaccgggaaagagattcgctg |
44474368 |
T |
|
| Q |
394 |
cgttatggggcaacggcgattacggtagattgggtctcggtaatttgaattctcaatggaaacctgctatttgcacctccttcc |
477 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44474367 |
cgttatggggcaacggtgattacggtagattgggtctcggtaatttgaattctcaatggaaacctgctatttgcacctccttcc |
44474284 |
T |
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