View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15280_low_11 (Length: 487)
Name: NF15280_low_11
Description: NF15280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15280_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 9534447 - 9534541
Alignment:
| Q |
71 |
aagaaccagaactagaactagtagaagtatta----gcttattagttaagcataataatacatggatcttaatacatgtttattttcgattggat |
161 |
Q |
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| T |
9534447 |
aagaaccagaactagaactagtacaagtattaattagcttactagttaagcataataatacatggatcttaatacatgtttattttcgattggat |
9534541 |
T |
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Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 8303964 - 8303884
Alignment:
| Q |
129 |
tggatcttaatacatgtttattttcgattggatgaatattaaacgtgtgtcaaggtctaaacttcaatttgtagcttcctt |
209 |
Q |
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| T |
8303964 |
tggatcttagtgcatgtttattttctatttgatgaatcttgaatgtgtgtcaaggtctaaactttaatttgtagcttcctt |
8303884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 202
Target Start/End: Complemental strand, 8301340 - 8301234
Alignment:
| Q |
96 |
agtattagcttattagttaagcataataatacatggatcttaatacatgtttattttcgattggatgaatattaaacgtgtgtcaaggtctaaacttcaa |
195 |
Q |
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| T |
8301340 |
agtattaacctattagttaagcatgaaaatctttggatcttagtgcatgtttattttccattggatgaatctcgaacgtgtgtgaaagtctaaactttaa |
8301241 |
T |
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| Q |
196 |
tttgtag |
202 |
Q |
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| T |
8301240 |
tttgtag |
8301234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 9534377 - 9534421
Alignment:
| Q |
31 |
tgaaagaaaaaaggttgaacaaatattcaatcataactagaagaa |
75 |
Q |
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| T |
9534377 |
tgaaagagaaaaggttgaacaaatattcaatcataactagaagaa |
9534421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 8302991 - 8303027
Alignment:
| Q |
173 |
gtgtgtcaaggtctaaacttcaatttgtagcttcctt |
209 |
Q |
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| T |
8302991 |
gtgtgtcaagatctaaactttaatttgtagcttcctt |
8303027 |
T |
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