View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15280_low_15 (Length: 416)
Name: NF15280_low_15
Description: NF15280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15280_low_15 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 244 - 416
Target Start/End: Complemental strand, 13830060 - 13829888
Alignment:
| Q |
244 |
tccaaattattagatacctgtaatattacatcaaacacaaatatatttcaaacaaggaagagtagaatattatacctcaaggaataggtcaggtttttgt |
343 |
Q |
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| T |
13830060 |
tccaaattattagatacatgtaatattacatcaaacacaaatatatttcaaacaaggaaaagtagaatatcatacctcgaggaataggtcaggtttttgt |
13829961 |
T |
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| Q |
344 |
ctacttatggcccaaataaccaacaagggaatgacaaccgcagcaaatacagcagagaaataaaaacagaaag |
416 |
Q |
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| T |
13829960 |
ctacttacagcccaaataaccaacaagggaatgacaaccgcagcaaatacagcagagaaataaaaacagaaag |
13829888 |
T |
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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 13830330 - 13830255
Alignment:
| Q |
11 |
caaaggaggaataccacttatattgaagaaaatcgaccttaaacttcatcaggtaaatgtgcatattttgcatcat |
86 |
Q |
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| T |
13830330 |
caaaggaggaataccacttatattgaagaaaattgaccttaaacttcatcaggtaaatgtgcatattttgcatcat |
13830255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 13830230 - 13830150
Alignment:
| Q |
115 |
ctaaacagaagattgaatgtcacatata-ttattggggnnnnnnn-gaagtgaaatttcacttaatttgtattttgctttg |
193 |
Q |
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| T |
13830230 |
ctaaacagaagattggatgtcacatataattattggggaaaaaaaagaagtgaaatttcacttaatttgtattttgctttg |
13830150 |
T |
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