View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15280_low_17 (Length: 397)
Name: NF15280_low_17
Description: NF15280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15280_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 27 - 387
Target Start/End: Original strand, 52566334 - 52566686
Alignment:
| Q |
27 |
tgtgatttgtgaacttaattatatatatatgtatgatttgagcaagtagacgagaaaaagaatctatttcttattatttgnnnnnnnnn--tctcaaggg |
124 |
Q |
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| T |
52566334 |
tgtgatttgtgaacttaattatatatat--gtatgatttgagcaagtagacgagaaaaagaatctatttcttattatttgaaaaaaaaaaatctcaagg- |
52566430 |
T |
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| Q |
125 |
actttatatgctgaaattctaattgtctaattttgcagttgaattatagcatgttcttaattcatatttgcataagcttgattacctacatgtttgtata |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52566431 |
actttatatgctgaaattctaattgtctaattttgcagttgaattatagcatgttcttaattcatatttgcataagcttgattaactacatgtttgtata |
52566530 |
T |
|
| Q |
225 |
tacattataattaataaaaggagtattaagattttgtataatgcaggttttaagaagacctattttcagatgagaaagcaacatgactacnnnnnnnnnn |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||| |
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| T |
52566531 |
tacattataattaataaaaggagtattaagattttgtataatgcaggttttaagaaca-ctattttcagatgagaaagcaacataactac------tttt |
52566623 |
T |
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| Q |
325 |
nnnnnnnnnnnnctcccatgttctttcctgtcccatatcaatttgaaaaatatttgacctatg |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52566624 |
tttttcttttttctcccatgttctttcctgtcccatatcaatttgaaaaatatttgacctatg |
52566686 |
T |
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