View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15280_low_19 (Length: 301)
Name: NF15280_low_19
Description: NF15280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15280_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 3253751 - 3254031
Alignment:
| Q |
18 |
gctagaacctattttttctgttcccataggcaaagcgaacatgctacttgctgcgattcattgggtcaagactc--gagagcttggatttgataatgtga |
115 |
Q |
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| T |
3253751 |
gctagaaccttttttttctgttcccataggcaaagcgaacatgctacttgctgcgattcattgggtcaagactcaagagagcttggatttgataatgtga |
3253850 |
T |
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| Q |
116 |
ttttctctacaaactccaagattgtagttcatgcatgattatactaagtatggtcttgttattagggagtgtcgtcacatagttgagtctagtgtttata |
215 |
Q |
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| T |
3253851 |
ttttctctacaaactccaagattgtagttcatgcatgattatacta-gtatggtcttgttattaggaagtgtcgtcacatatttgagtctagtgtttata |
3253949 |
T |
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| Q |
216 |
actcatgctgagttctctaagagagaagctaatgtggttgctcatcatcttgctaaagctacatgtatttattcttctctct |
297 |
Q |
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| T |
3253950 |
actcatgctgaattctctaagagagaagctaatgtggttgctcatcatcttgctaaagctacatgtatttattcttctctct |
3254031 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 27757131 - 27757199
Alignment:
| Q |
203 |
tctagtgtttataactcatgctgagttctctaagagagaagctaatgtggttgctcatcatcttgctaa |
271 |
Q |
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| T |
27757131 |
tctagtgtttacaactcatgttgagttctctaagagagacgctaacatggttgttcttcatcttgctaa |
27757199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 27757005 - 27757055
Alignment:
| Q |
92 |
gagagcttggatttgataatgtgattttctctacaaactccaagattgtag |
142 |
Q |
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| T |
27757005 |
gagagcttggatttgataatataattttctctacacactccaaaattgtag |
27757055 |
T |
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