View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15280_low_2 (Length: 742)

Name: NF15280_low_2
Description: NF15280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15280_low_2
NF15280_low_2
[»] chr7 (20 HSPs)
chr7 (525-643)||(30292380-30292498)
chr7 (537-686)||(30315854-30316004)
chr7 (163-310)||(30292540-30292686)
chr7 (526-686)||(30287320-30287474)
chr7 (537-686)||(30304988-30305137)
chr7 (537-686)||(30300196-30300339)
chr7 (66-143)||(30287671-30287748)
chr7 (354-454)||(27944993-27945093)
chr7 (367-454)||(2034394-2034480)
chr7 (354-441)||(17851396-17851483)
chr7 (260-311)||(30287540-30287591)
chr7 (314-432)||(2425700-2425818)
chr7 (316-441)||(21140951-21141076)
chr7 (360-432)||(5235960-5236032)
chr7 (354-454)||(7328698-7328798)
chr7 (373-441)||(11722124-11722192)
chr7 (312-352)||(33994294-33994334)
chr7 (354-441)||(1433419-1433506)
chr7 (354-441)||(26329389-26329476)
chr7 (102-143)||(30292842-30292883)
[»] chr2 (4 HSPs)
chr2 (354-454)||(20539681-20539781)
chr2 (354-400)||(30527602-30527648)
chr2 (359-431)||(23921228-23921300)
chr2 (354-420)||(4882703-4882769)
[»] chr5 (6 HSPs)
chr5 (352-441)||(6326302-6326391)
chr5 (359-454)||(22013366-22013461)
chr5 (360-432)||(12927628-12927700)
chr5 (378-454)||(19820425-19820501)
chr5 (360-423)||(28262409-28262472)
chr5 (354-435)||(25863175-25863256)
[»] chr4 (5 HSPs)
chr4 (352-433)||(44081582-44081663)
chr4 (354-437)||(16303273-16303356)
chr4 (354-408)||(999355-999409)
chr4 (357-423)||(30838193-30838259)
chr4 (354-399)||(40742598-40742643)
[»] chr6 (9 HSPs)
chr6 (354-441)||(7938081-7938168)
chr6 (354-441)||(426521-426608)
chr6 (354-441)||(5732517-5732604)
chr6 (351-417)||(17341668-17341734)
chr6 (380-447)||(5000659-5000726)
chr6 (355-441)||(4118341-4118427)
chr6 (354-424)||(19040334-19040404)
chr6 (362-420)||(25038086-25038144)
chr6 (354-435)||(6389714-6389795)
[»] chr3 (12 HSPs)
chr3 (354-441)||(8383222-8383309)
chr3 (354-441)||(28917966-28918053)
chr3 (360-426)||(23870572-23870638)
chr3 (355-423)||(16788995-16789063)
chr3 (354-454)||(55401027-55401127)
chr3 (354-433)||(11658788-11658867)
chr3 (362-441)||(15796309-15796388)
chr3 (354-441)||(24205048-24205135)
chr3 (354-401)||(32804547-32804594)
chr3 (371-425)||(5339089-5339143)
chr3 (352-398)||(49505159-49505205)
chr3 (352-417)||(10268491-10268556)
[»] chr1 (11 HSPs)
chr1 (317-440)||(398735-398858)
chr1 (354-441)||(15323128-15323215)
chr1 (360-433)||(34257923-34257996)
chr1 (354-441)||(1486716-1486803)
chr1 (354-398)||(9629907-9629951)
chr1 (354-414)||(21530681-21530741)
chr1 (354-454)||(39130774-39130874)
chr1 (354-400)||(25272488-25272534)
chr1 (354-435)||(6612178-6612259)
chr1 (354-423)||(46348390-46348459)
chr1 (354-423)||(52903232-52903301)
[»] scaffold0223 (1 HSPs)
scaffold0223 (352-454)||(20124-20226)
[»] scaffold0053 (1 HSPs)
scaffold0053 (354-441)||(8763-8850)
[»] scaffold0003 (1 HSPs)
scaffold0003 (354-441)||(241559-241646)
[»] chr8 (4 HSPs)
chr8 (354-433)||(20873042-20873121)
chr8 (371-423)||(12936515-12936567)
chr8 (354-441)||(2572063-2572150)
chr8 (360-423)||(24447012-24447075)
[»] scaffold0022 (1 HSPs)
scaffold0022 (360-454)||(90795-90889)
[»] scaffold0024 (1 HSPs)
scaffold0024 (352-401)||(68247-68296)
[»] scaffold0018 (1 HSPs)
scaffold0018 (354-431)||(192256-192333)
[»] scaffold0697 (1 HSPs)
scaffold0697 (354-414)||(1636-1696)
[»] scaffold0236 (1 HSPs)
scaffold0236 (354-400)||(25775-25821)
[»] scaffold0044 (1 HSPs)
scaffold0044 (354-416)||(53170-53232)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 2e-48; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 525 - 643
Target Start/End: Complemental strand, 30292498 - 30292380
Alignment:
Q  525 tagtagcagagcagaggaggcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttat 624  Q
    |||||||||||  |||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  30292498 tagtagcagagaggaggtggcacaaaacttgttcttgattaatttattcatagtaggaaagtggaactctagttatagttacaagctaatgccgttttat 30292399  T
Q  625 tcattgctcactatgagct 643  Q
    |||||||||||||||||||    
T  30292398 tcattgctcactatgagct 30292380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 537 - 686
Target Start/End: Complemental strand, 30316004 - 30315854
Alignment:
Q  537 agaggaggcacaaaacttgttcttgattaatttattcatagtagaaa-ggtggaactctagttatagttacaagctaatgccgttttattcattgctcac 635  Q
    ||||| |||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| | ||||||| |||||||||||||||| ||||||||    
T  30316004 agaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttacaattacaagataatgccgttttattctttgctcac 30315905  T
Q  636 tatgagctataggaccttacagcatacattcttaatatttgatcactcatt 686  Q
    ||||||||||||  ||||||||||||||| | ||| |||||||||||||||    
T  30315904 tatgagctatagttccttacagcatacatgcataacatttgatcactcatt 30315854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 163 - 310
Target Start/End: Complemental strand, 30292686 - 30292540
Alignment:
Q  163 cacaaaattatatttaaaaactagagaattttataactttagtaaattactttgcataacacaaaacaaattataaaattttatgggtgt-ttaaaagaa 261  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||  | ||||||||||||||||||||| |||||||||    
T  30292686 cacaaaattatattttaaaactagagaatttcataactttagtaaattactttacataacacaaa--atattataaaattttatgggtgtcttaaaagaa 30292589  T
Q  262 atatagtttaaggtaatatatcctccatttatgtttgattaagttattc 310  Q
    |||||||||||||  |||||||| ||||||||  |||||||||| ||||    
T  30292588 atatagtttaaggacatatatccaccatttatacttgattaagtcattc 30292540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 526 - 686
Target Start/End: Complemental strand, 30287474 - 30287320
Alignment:
Q  526 agtagcagagcagaggaggcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttatt 625  Q
    ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||      |||||||| |||||||||||||||    
T  30287474 agtagcagagaggaggaggcacaaaacttattcttgattaatttattcatagtagaaaggaggaactcta------gttacaagataatgccgttttatt 30287381  T
Q  626 cattgctcactatgagctataggaccttacagcatacattcttaatatttgatcactcatt 686  Q
    | || |||| ||||||||||||  ||||||||||||||| | ||| |||||||||||||||    
T  30287380 cttttctcattatgagctatagttccttacagcatacatgcataacatttgatcactcatt 30287320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 537 - 686
Target Start/End: Complemental strand, 30305137 - 30304988
Alignment:
Q  537 agaggaggcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttattcattgctcact 636  Q
    ||||| ||| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |    
T  30305137 agaggtggctcaaaacttattcttgattcagttattcatagtagaaaggtggaactctagttatagttacaagataatgccgttttattcatcgctcatt 30305038  T
Q  637 atgagctataggaccttacagcatacattcttaatatttgatcactcatt 686  Q
    || ||||||||  || || | ||||| | | |||||||||||||||||||    
T  30305037 attagctatagctccatatatcatacttgcataatatttgatcactcatt 30304988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 537 - 686
Target Start/End: Complemental strand, 30300339 - 30300196
Alignment:
Q  537 agaggaggcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttattcattgctcact 636  Q
    ||||| |||||||||||| |||||||||||||||||||| || ||||||||||||||      ||| |||||| || |||||||||||||  ||||||||    
T  30300339 agaggtggcacaaaacttattcttgattaatttattcatggtggaaaggtggaactc------tagatacaagatattgccgttttattctctgctcact 30300246  T
Q  637 atgagctataggaccttacagcatacattcttaatatttgatcactcatt 686  Q
    |||||||||    ||||||||||||||  | |||||||||||||||||||    
T  30300245 atgagctatgactccttacagcatacaagcataatatttgatcactcatt 30300196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 30287748 - 30287671
Alignment:
Q  66 ttagttgtagtttgcttcttttgtattttacttgattggtgcttcttgttttggccaccaagtggcggattattgttg 143  Q
    |||||| |||||||||||||||||| ||||| |  ||||||||||||||||||| |||||||||| ||||| ||||||    
T  30287748 ttagttatagtttgcttcttttgtaatttacctagttggtgcttcttgttttggtcaccaagtggtggattgttgttg 30287671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 354 - 454
Target Start/End: Complemental strand, 27945093 - 27944993
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgtatatgtgcttca 453  Q
    ||||||| |||| ||||| |||||| | |||||| ||||||||||  | | ||| ||||||||| ||||| ||||||||||| |||||||  ||||||||    
T  27945093 gacacttgtaattacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttca 27944994  T
Q  454 t 454  Q
    |    
T  27944993 t 27944993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 367 - 454
Target Start/End: Complemental strand, 2034480 - 2034394
Alignment:
Q  367 acactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgtatatgtgcttcat 454  Q
    ||||||||||||||||| ||| ||||||||||  | | ||||||||| ||||||||| |||||| | ||||||||||  |||||||||    
T  2034480 acactaaattatatgatattctcaaattattagtggtgtcgacgtgtaagtatccgtgtcgtgt-cagtatccgtatccgtgcttcat 2034394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 17851483 - 17851396
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    ||||| |||||| ||||| |||||| ||||||||  ||||||||| || |||||| ||||| |||||| | ||||||||||| |||||    
T  17851483 gacacatataattacactgaattatgtgattttctaaaattattagcggtatcgatgtgtcggtatccatgtcgtgtccggtgtccgt 17851396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 30287591 - 30287540
Alignment:
Q  260 aaatatagtttaaggtaatatatcctccatttatgtttgattaagttattca 311  Q
    ||||||| |||||||  |||||||||||||||||| ||||||||||||||||    
T  30287591 aaatatactttaaggacatatatcctccatttatgcttgattaagttattca 30287540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 314 - 432
Target Start/End: Original strand, 2425700 - 2425818
Alignment:
Q  314 cctatgaaacacgaacactccttggatcagtcgtgtctctgacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgt 413  Q
    |||||||| |||| | ||| ||||||| || |||||| | ||||| |||| |  |||| |||||| |||||||| ||||||||||||| |  || |||||    
T  2425700 cctatgaagcacggatacttcttggattagccgtgtcaccgacacatatagttccacttaattatgtgattttctcaaattattaacggtgccggcgtgt 2425799  T
Q  414 cagtatccgtatcgtgtcc 432  Q
    ||||||| || ||||||||    
T  2425800 cagtatctgtgtcgtgtcc 2425818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 441
Target Start/End: Original strand, 21140951 - 21141076
Alignment:
Q  316 tatgaaacacgaacactccttggatcagtcgtgtctctgacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtca 415  Q
    |||||| ||| |||||| ||||||| || |  | ||| ||||| |||||||||||| |||||||||||||||  |||||||||  | | ||||||||||     
T  21140951 tatgaagcacaaacacttcttggattagacacgactccgacacctataatcacactgaattatatgattttcttaaattattagtggtgtcgacgtgtcg 21141050  T
Q  416 gtatccgtatcgtgtccggtatccgt 441  Q
    |  ||||| |||||| |||| |||||    
T  21141051 gcgtccgtgtcgtgtacggtgtccgt 21141076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 432
Target Start/End: Complemental strand, 5236032 - 5235960
Alignment:
Q  360 tataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtcc 432  Q
    |||||| |||||||||||||| ||||||  ||||||||| || | ||||||||||||| || || ||||||||    
T  5236032 tataattacactaaattatataattttcttaaattattagcggtgtcgacgtgtcagtgtctgtgtcgtgtcc 5235960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 454
Target Start/End: Original strand, 7328698 - 7328798
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgtatatgtgcttca 453  Q
    ||||| |||||| |||||||||||| | |||||| |||||||||| |  ||||||||||| | | || || |||||| |||| |||||||  ||||||||    
T  7328698 gacacatataattacactaaattatgttattttctcaaattattagcagtatcgacgtgttaatgtctgtgtcgtgttcggtgtccgtatccgtgcttca 7328797  T
Q  454 t 454  Q
    |    
T  7328798 t 7328798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 11722124 - 11722192
Alignment:
Q  373 aattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    |||||| |||||||| |||||| ||| || | ||| ||||||||| ||||| |||||||||||||||||    
T  11722124 aattatgtgattttctcaaattgttagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgt 11722192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 33994334 - 33994294
Alignment:
Q  312 gacctatgaaacacgaacactccttggatcagtcgtgtctc 352  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  33994334 gacctatgaaacacgaacactccttggattaggcgtgtctc 33994294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 1433506 - 1433419
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    ||||| |||||| |||| |||| || |||||||| ||||||||||||| | ||| ||||||| | ||||| |||||| |||| |||||    
T  1433506 gacacatataattacaccaaatgatgtgattttctcaaattattaacggtgtcggcgtgtcaatgtccgtgtcgtgttcggtgtccgt 1433419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 441
Target Start/End: Original strand, 26329389 - 26329476
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    ||||| |||||| ||||| |||| | || ||||| ||||||||||||||| ||| ||||||||| || || |||||||| || |||||    
T  26329389 gacacatataattacactgaattgtgtgtttttctcaaattattaacgatgtcggcgtgtcagtgtctgtgtcgtgtccagtgtccgt 26329476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 30292883 - 30292842
Alignment:
Q  102 tggtgcttcttgttttggccaccaagtggcggattattgttg 143  Q
    |||||||||||||||||| |||||||||| ||||| ||||||    
T  30292883 tggtgcttcttgttttggtcaccaagtggtggattgttgttg 30292842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 354 - 454
Target Start/End: Original strand, 20539681 - 20539781
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgtatatgtgcttca 453  Q
    ||||||| |||| ||||||||||||||||||||  |||||||||| |  | ||||||||||||| ||||| |||||||| || |||||||  ||||||||    
T  20539681 gacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttca 20539780  T
Q  454 t 454  Q
    |    
T  20539781 t 20539781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 30527602 - 30527648
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaac 400  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  30527602 gacacatataattacactaaattatatgattttctcaaattattaac 30527648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 431
Target Start/End: Complemental strand, 23921300 - 23921228
Alignment:
Q  359 ttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtc 431  Q
    ||||||| ||||| |||||| | |||||| ||||||||||||| ||||||| ||||| | || ||||||||||    
T  23921300 ttataattacactgaattatgtaattttctcaaattattaacggtatcgacctgtcaatgtctgtatcgtgtc 23921228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 4882703 - 4882769
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatc 420  Q
    ||||||| |||| ||||| |||||||| |||||  ||||| |||| || ||||||||||||||||||    
T  4882703 gacacttgtaattacactgaattatatcattttttcaaataattagcggtatcgacgtgtcagtatc 4882769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 352 - 441
Target Start/End: Original strand, 6326302 - 6326391
Alignment:
Q  352 ctgacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    ||||||||| |||| ||||| |||||| | |||||| ||||||| || |||| ||| ||||||||| ||||| |||||||||||||||||    
T  6326302 ctgacacttgtaattacactgaattatgtaattttctcaaattactagcgatgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgt 6326391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 359 - 454
Target Start/End: Complemental strand, 22013461 - 22013366
Alignment:
Q  359 ttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgtatatgtgcttcat 454  Q
    ||||||| |||||||||||| | |||||  |||||||||| |  | ||| ||||||||| ||||| ||||||||||| |||||||  |||||||||    
T  22013461 ttataattacactaaattatgtaatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcat 22013366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 432
Target Start/End: Complemental strand, 12927700 - 12927628
Alignment:
Q  360 tataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtcc 432  Q
    |||||| ||||||||||||||||||||| |||||||||| |||| |||  ||||| || || ||||| |||||    
T  12927700 tataattacactaaattatatgattttctcaaattattagcgatgtcggtgtgtccgtgtctgtatcatgtcc 12927628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 454
Target Start/End: Original strand, 19820425 - 19820501
Alignment:
Q  378 tatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgtatatgtgcttcat 454  Q
    |||||||||| |||||||||| || | |||  |||||||| ||||| ||||||||||| |||||||  |||||||||    
T  19820425 tatgattttctcaaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcat 19820501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 423
Target Start/End: Original strand, 28262409 - 28262472
Alignment:
Q  360 tataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgt 423  Q
    |||||| || ||||||||| |||||||| |||||||| |||| ||| | |||||||||||||||    
T  28262409 tataattaccctaaattatgtgattttctcaaattatcaacgttattggcgtgtcagtatccgt 28262472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 435
Target Start/End: Complemental strand, 25863256 - 25863175
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggt 435  Q
    |||||||||||| ||||| |||||||| |||||| ||||||||||   || ||||||||||  | || || |||||||||||    
T  25863256 gacacttataattacactgaattatatcattttctcaaattattatacatgtcgacgtgtcgatgtctgtgtcgtgtccggt 25863175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 352 - 433
Target Start/End: Original strand, 44081582 - 44081663
Alignment:
Q  352 ctgacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccg 433  Q
    ||||||| |||||| ||| ||||||||||||||||  |||||||||||||||||||  |||||||| ||| | |||||||||    
T  44081582 ctgacacatataattacattaaattatatgattttttcaaattattaacgatatcggtgtgtcagtgtccttgtcgtgtccg 44081663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 16303273 - 16303356
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtat 437  Q
    ||||||| |||| |||||||||||||| |||||  |||| ||||| |  | ||| ||||||||| |||||||||||||| ||||    
T  16303273 gacacttgtaattacactaaattatatcattttttcaaaatattatctttgtcggcgtgtcagtgtccgtatcgtgtccagtat 16303356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 999355 - 999409
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcga 408  Q
    ||||| |||||| ||||||||||||||||||| | |||||||||| |||| ||||    
T  999355 gacacatataattacactaaattatatgatttactcaaattattagcgatgtcga 999409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 357 - 423
Target Start/End: Complemental strand, 30838259 - 30838193
Alignment:
Q  357 acttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgt 423  Q
    ||||||||| |||||||||||||| |||||  |||||||||| |  ||||||||| ||||| |||||    
T  30838259 acttataattacactaaattatataattttatcaaattattagcagtatcgacgtatcagtgtccgt 30838193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 40742643 - 40742598
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaa 399  Q
    ||||| |||||| |||||| |||||||||||||| |||||||||||    
T  40742643 gacacatataattacactagattatatgattttctcaaattattaa 40742598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 7938168 - 7938081
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    |||||||||||| ||||||||||||||||||||  |||||||||| |  | ||| ||||||||| ||| | ||||||||||| |||||    
T  7938168 gacacttataattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgt 7938081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 354 - 441
Target Start/End: Original strand, 426521 - 426608
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    ||||||| |||| ||| | |||||| |||||||  ||||||||||||  | ||| ||||||||| ||||| |||||||||||||||||    
T  426521 gacacttgtaattacatttaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgt 426608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 354 - 441
Target Start/End: Original strand, 5732517 - 5732604
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    ||||| |||||| |||||||| ||| |||||||| ||||||||||||| | ||| ||||||||| ||| | |||||||| || |||||    
T  5732517 gacacatataattacactaaaatatgtgattttctcaaattattaacggtgtcggcgtgtcagtgtccatgtcgtgtccagtgtccgt 5732604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 351 - 417
Target Start/End: Original strand, 17341668 - 17341734
Alignment:
Q  351 tctgacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagt 417  Q
    ||||||||||||||| ||||| |||||| |||||||  ||||||||||||| | ||| |||||||||    
T  17341668 tctgacacttataattacactgaattatgtgattttatcaaattattaacggtgtcggcgtgtcagt 17341734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 380 - 447
Target Start/End: Original strand, 5000659 - 5000726
Alignment:
Q  380 tgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgtatatgt 447  Q
    |||||||| | |||||||| || | ||||||||||||||||||| || |||||||| ||||| |||||    
T  5000659 tgattttctcgaattattagcggtgtcgacgtgtcagtatccgtgtcatgtccggtgtccgtgtatgt 5000726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 355 - 441
Target Start/End: Original strand, 4118341 - 4118427
Alignment:
Q  355 acacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    |||||| |||| ||| | |||||| |||||||  |||||||||||| |||||| ||||| | ||| ||| ||||||||||| |||||    
T  4118341 acacttgtaattacatttaattatgtgattttttcaaattattaactatatcgtcgtgttaatatacgtgtcgtgtccggtgtccgt 4118427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 19040404 - 19040334
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgta 424  Q
    ||||| |||||| ||||| |||||| |||||||| |||||||||| || | ||| ||||||||||| ||||    
T  19040404 gacacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtattcgta 19040334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 362 - 420
Target Start/End: Original strand, 25038086 - 25038144
Alignment:
Q  362 taatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatc 420  Q
    |||| |||||||||||| | |||||| ||||||||||||| | || |||||||||||||    
T  25038086 taattacactaaattatgtaattttctcaaattattaacggtgtcaacgtgtcagtatc 25038144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 435
Target Start/End: Complemental strand, 6389795 - 6389714
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggt 435  Q
    ||||| ||| || |||||||||||||| |||||| |||||||||| |  | ||| ||||| ||| ||||| |||||||||||    
T  6389795 gacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggt 6389714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 8383309 - 8383222
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    |||||||||||| ||||| ||||||||||||||| |||||||||| || | ||| ||||||| | ||||| |||||||| || |||||    
T  8383309 gacacttataattacactgaattatatgattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtcgtgtccagtgtccgt 8383222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 28918053 - 28917966
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    ||||||| |||| ||||| |||||| |||||||  |||||||||| | || ||| ||||||||| ||||| ||||||||||| |||||    
T  28918053 gacacttgtaattacactgaattatgtgattttttcaaattattagctatgtcggcgtgtcagtttccgtgtcgtgtccggtgtccgt 28917966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 426
Target Start/End: Original strand, 23870572 - 23870638
Alignment:
Q  360 tataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatc 426  Q
    |||||||||||| ||||||||||||||  |||||||||| || | |||||||||| || ||||||||    
T  23870572 tataatcacactgaattatatgattttttcaaattattagcggtgtcgacgtgtccgtgtccgtatc 23870638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 16789063 - 16788995
Alignment:
Q  355 acacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgt 423  Q
    ||||||||||| ||||| ||||||||||||||   ||||||||||| ||||||  || |||||||||||    
T  16789063 acacttataattacactgaattatatgatttttttaaattattaactatatcggtgtatcagtatccgt 16788995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 454
Target Start/End: Complemental strand, 55401127 - 55401027
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgtatatgtgcttca 453  Q
    ||||||| |||| |||||||||||| |||||||  ||||||||||    | ||| ||| ||||| ||||| |||| |||||| ||||||| |||||||||    
T  55401127 gacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgtatctgtgcttca 55401028  T
Q  454 t 454  Q
    |    
T  55401027 t 55401027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 433
Target Start/End: Complemental strand, 11658867 - 11658788
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccg 433  Q
    ||||| |||||||||||| ||||||  ||||||| ||||||||||||||| | |  |||||||| || || |||||||||    
T  11658867 gacacatataatcacactgaattatgcgattttctcaaattattaacgatgttggtgtgtcagtgtctgtgtcgtgtccg 11658788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 441
Target Start/End: Original strand, 15796309 - 15796388
Alignment:
Q  362 taatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    |||| ||||| ||||||||||||||  ||||||||||||  | ||| ||||||| | ||||| ||||||||||| |||||    
T  15796309 taattacactgaattatatgattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 15796388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 441
Target Start/End: Original strand, 24205048 - 24205135
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    |||||||||||| |||||  ||||| | |||||| |||||||||| |  | ||| ||||||||| ||||| ||||||||||| |||||    
T  24205048 gacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 24205135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 32804547 - 32804594
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacg 401  Q
    ||||| |||||| |||||||||||| |||||||| |||||||||||||    
T  32804547 gacacatataattacactaaattatgtgattttctcaaattattaacg 32804594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 371 - 425
Target Start/End: Complemental strand, 5339143 - 5339089
Alignment:
Q  371 taaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtat 425  Q
    |||||||| |||||||| |||||||||||| || ||| |||||| ||||||||||    
T  5339143 taaattatgtgattttctcaaattattaacaatgtcggcgtgtctgtatccgtat 5339089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 352 - 398
Target Start/End: Original strand, 49505159 - 49505205
Alignment:
Q  352 ctgacacttataatcacactaaattatatgattttcacaaattatta 398  Q
    ||||||| |||||| |||||||||||| |||||||| ||||||||||    
T  49505159 ctgacacatataattacactaaattatgtgattttctcaaattatta 49505205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 417
Target Start/End: Original strand, 10268491 - 10268556
Alignment:
Q  352 ctgacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagt 417  Q
    ||||||||| |||| |||||||||||| |||||||  ||||||||||||  | ||| |||||||||    
T  10268491 ctgacacttgtaattacactaaattatgtgattttttcaaattattaactgtgtcggcgtgtcagt 10268556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 440
Target Start/End: Original strand, 398735 - 398858
Alignment:
Q  317 atgaaacacgaacactccttggatcagtcgtgtctctgacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcag 416  Q
    ||||| |||| ||||| ||| ||| || |||||| | ||||| |||||| ||||| |||||| |||||||  |||||||||| || | ||| ||||||||    
T  398735 atgaagcacggacacttcttagattaggcgtgtcccggacacctataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcag 398834  T
Q  417 tatccgtatcgtgtccggtatccg 440  Q
    | ||||| ||||||||||| ||||    
T  398835 tgtccgtgtcgtgtccggtgtccg 398858  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 15323215 - 15323128
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    |||||||| ||| |||||||||||| |||||||  ||||||||||||  ||||||| ||||||| ||| | ||||||||||| |||||    
T  15323215 gacacttacaattacactaaattatgtgattttttcaaattattaactgtatcgacatgtcagtgtccatgtcgtgtccggtgtccgt 15323128  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 360 - 433
Target Start/End: Original strand, 34257923 - 34257996
Alignment:
Q  360 tataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccg 433  Q
    |||||| |||||||||||| |||||||   |||||||||||| | ||||||||||| |||||||||| ||||||    
T  34257923 tataattacactaaattatgtgattttattaaattattaacggtgtcgacgtgtcaatatccgtatcatgtccg 34257996  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 354 - 441
Target Start/End: Original strand, 1486716 - 1486803
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    |||||||||||| ||||| |||||| |||||||  |||||||||| |  | ||  ||||||||||||||| |||| ||||||||||||    
T  1486716 gacacttataattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgtatccggtatccgt 1486803  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 9629907 - 9629951
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattatta 398  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||    
T  9629907 gacacttataatcacactgaattatatgattttatcaaattatta 9629951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 21530741 - 21530681
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtc 414  Q
    |||||||||||| | || |||||||||||||||| ||||||||||||| | ||| ||||||    
T  21530741 gacacttataattataccaaattatatgattttctcaaattattaacggtgtcggcgtgtc 21530681  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 454
Target Start/End: Original strand, 39130774 - 39130874
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgtatatgtgcttca 453  Q
    ||||| |||||| |||||||||||||| ||||||  ||||||||||   | ||  ||||||| ||||| | ||||||||||| |||||||  ||||||||    
T  39130774 gacacatataattacactaaattatataattttctaaaattattaatagtgtcagcgtgtcaatatccatgtcgtgtccggtgtccgtatccgtgcttca 39130873  T
Q  454 t 454  Q
    |    
T  39130874 t 39130874  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 25272534 - 25272488
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaac 400  Q
    |||||||||||| |||||||||||| |||||||| |||||| |||||    
T  25272534 gacacttataattacactaaattatgtgattttctcaaattgttaac 25272488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 435
Target Start/End: Original strand, 6612178 - 6612259
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggt 435  Q
    ||||||| |||| ||||| |||||| | |||||  ||||||||||||  ||||| ||||||| | ||||| |||||||||||    
T  6612178 gacacttgtaattacactgaattatgtaattttttcaaattattaactgtatcggcgtgtcattgtccgtgtcgtgtccggt 6612259  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 423
Target Start/End: Original strand, 46348390 - 46348459
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgt 423  Q
    ||||||| |||| ||||||||||||||||||||  |||||||||| |  | ||| ||||||||| |||||    
T  46348390 gacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgt 46348459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 423
Target Start/End: Complemental strand, 52903301 - 52903232
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgt 423  Q
    ||||| |||||| ||||| ||||||||||||||   |||||||||||| ||||| ||||| ||| |||||    
T  52903301 gacacatataattacactgaattatatgattttattaaattattaacggtatcggcgtgttagtgtccgt 52903232  T

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Target: scaffold0223 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 352 - 454
Target Start/End: Complemental strand, 20226 - 20124
Alignment:
Q  352 ctgacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgtatatgtgctt 451  Q
    ||||||||| |||| ||||| |||||| |||||||  |||||||||| |  | ||| ||||||| | ||||| ||||||||||| ||||||| |||||||    
T  20226 ctgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgctt 20127  T
Q  452 cat 454  Q
    |||    
T  20126 cat 20124  T

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Target: scaffold0053 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 8850 - 8763
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    ||||||| |||| ||||||||| ||||||||||  |||||||||| |  | ||| ||||||||| ||||| ||||||||||| |||||    
T  8850 gacacttgtaattacactaaataatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 8763  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 241646 - 241559
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    |||||| ||||| |||||||||||| |||||||  |||||||||| |  | ||| ||||||||| ||||| ||||||||||| |||||    
T  241646 gacactcataattacactaaattatgtgatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 241559  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 354 - 433
Target Start/End: Complemental strand, 20873121 - 20873042
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccg 433  Q
    ||||||| |||| |||||||||||| |||||||  |||||||||| | || ||| ||||||||| ||||| |||||||||    
T  20873121 gacacttgtaattacactaaattatgtgattttttcaaattattatctatgtcggcgtgtcagtgtccgtgtcgtgtccg 20873042  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 371 - 423
Target Start/End: Original strand, 12936515 - 12936567
Alignment:
Q  371 taaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgt 423  Q
    |||||||| |||||||  |||||||||||| || |||||||||||||||||||    
T  12936515 taaattatgtgattttatcaaattattaacaatgtcgacgtgtcagtatccgt 12936567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 441
Target Start/End: Original strand, 2572063 - 2572150
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgt 441  Q
    ||||||| |||| |||||||||||| |||||||  ||||||||||    | |||||||||| |||||||| |||||||| || |||||    
T  2572063 gacacttgtaattacactaaattatgtgattttttcaaattattaggtgtgtcgacgtgtcggtatccgtgtcgtgtccagtgtccgt 2572150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 423
Target Start/End: Complemental strand, 24447075 - 24447012
Alignment:
Q  360 tataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgt 423  Q
    |||||| || ||||||||| |||||||| |||||||| |||| ||| | |||||||||||||||    
T  24447075 tataattaccctaaattatgtgattttctcaaattatcaacgttattggcgtgtcagtatccgt 24447012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 454
Target Start/End: Complemental strand, 90889 - 90795
Alignment:
Q  360 tataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtccggtatccgtatatgtgcttcat 454  Q
    |||||| ||||| ||||||||||||||| ||||||||||| | | | |  |||||||| || || |||||||| |||||||||| ||||| ||||    
T  90889 tataattacactgaattatatgattttctcaaattattaatggtgttggtgtgtcagtgtctgtgtcgtgtccagtatccgtatttgtgcatcat 90795  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 68247 - 68296
Alignment:
Q  352 ctgacacttataatcacactaaattatatgattttcacaaattattaacg 401  Q
    ||||||| |||||| | ||||||||||||||||||| |||||||||||||    
T  68247 ctgacacctataattatactaaattatatgattttctcaaattattaacg 68296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 354 - 431
Target Start/End: Original strand, 192256 - 192333
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcagtatccgtatcgtgtc 431  Q
    ||||||| |||| ||||  |||||| | |||||| ||||||||||||| | ||| ||||||||| |||||||||||||    
T  192256 gacacttgtaattacaccgaattatgtaattttctcaaattattaacggtgtcggcgtgtcagtgtccgtatcgtgtc 192333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 1696 - 1636
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtc 414  Q
    |||||||||||| | || |||||||||||||||| ||||||||||||| | ||| ||||||    
T  1696 gacacttataattataccaaattatatgattttctcaaattattaacggtgtcggcgtgtc 1636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 25775 - 25821
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaac 400  Q
    |||||||||||| |||||||||||| |||||||| | ||||||||||    
T  25775 gacacttataattacactaaattatgtgattttctctaattattaac 25821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 53232 - 53170
Alignment:
Q  354 gacacttataatcacactaaattatatgattttcacaaattattaacgatatcgacgtgtcag 416  Q
    |||||||||||| ||||| |||||| |||||||| |||||||||  || ||||| ||||||||    
T  53232 gacacttataattacactgaattatgtgattttctcaaattattggcggtatcggcgtgtcag 53170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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