View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15280_low_3 (Length: 679)
Name: NF15280_low_3
Description: NF15280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15280_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 304 - 663
Target Start/End: Original strand, 26556119 - 26556477
Alignment:
| Q |
304 |
gtcacgtgagacaaaaagctaacatcaggaactaaaagcaatacttttgaatttgcagagatttaatccaatcaaaaaac-cttacaagattaaaaccaa |
402 |
Q |
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| T |
26556119 |
gtcacgtgacccaataagctaacatcaagaactaaaagcaatacttttgaatttgcagagatttaatccaataaaaaaaaacttacaagactaaaaccaa |
26556218 |
T |
|
| Q |
403 |
aaaacgctatagttgcaaggactaaaattatatttaaacctatagtacgtatactatattcatttattcaccagtatttaattataatagttacaaagta |
502 |
Q |
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| T |
26556219 |
aaaacattatagttgcaaggactaaaatcatatttaaaccta--gtacgtatgctatattcatttattcaccagtatttaattataatagttacaaagta |
26556316 |
T |
|
| Q |
503 |
aggataaactaacctatgttcatcttccgtccaaggaacaccctttcgccgttcttgataagaacttgaagccttagttccctttttcacagctcctcct |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26556317 |
aggataaactaacctatgttcatcttccgtccaaggaacaccctttcgccgttcttgataagaactcgaagccttagttccctttttcacagctcctcct |
26556416 |
T |
|
| Q |
603 |
tcaccagcacacgttgttgagctctttgaaaaagaatcataatctggcagaggcacaaaac |
663 |
Q |
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| T |
26556417 |
tcaccagcacacgttgttgagctctttgaaaaagaatcataatctggcagaggcacaaaac |
26556477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 26555582 - 26555888
Alignment:
| Q |
1 |
ttgaaaaattttaaggcacagctaacatagcttaggatgtatatatcagtatcgtcaaatagcggctgtagtggcactatatcactatataggtatcgca |
100 |
Q |
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| T |
26555582 |
ttgaaaaattttaaggcacagctaacatagcttaggatgtatatatcagtatcgtcaaatagcggctttagtggcactatatcactatatag------ca |
26555675 |
T |
|
| Q |
101 |
tagcagaatttgaacaaattgctatgattttgtgctacac------gtacaaggtgttgtcaaatagcgactataacattgtagccagtgttattgatgg |
194 |
Q |
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| T |
26555676 |
tagcagaatttgaacaaattgctatgattttgtgctacactattaagtacaaggtgttgtcaaatagcgactataacaatgtagccagtgttattgatgg |
26555775 |
T |
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| Q |
195 |
gggaaagccaaaaatccgtcattttaatcattcatatccaccataaaacactatgatgccctctaccaattggatatggcggttgtccaaaaatctagta |
294 |
Q |
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| T |
26555776 |
gggaaagccaaaaatccgtcattttaatcatccatatccaccataaaacactatgatgccttttaccaattggatatggtggttgtccaaaaatctgtta |
26555875 |
T |
|
| Q |
295 |
ccgcaatccgtca |
307 |
Q |
| |
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||||||||||||| |
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| T |
26555876 |
ccgcaatccgtca |
26555888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 663
Target Start/End: Complemental strand, 26776234 - 26776198
Alignment:
| Q |
627 |
tttgaaaaagaatcataatctggcagaggcacaaaac |
663 |
Q |
| |
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| T |
26776234 |
tttgaaaaagaatcataatctggtagaggcacaaaac |
26776198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 391 - 442
Target Start/End: Complemental strand, 22159389 - 22159338
Alignment:
| Q |
391 |
gattaaaaccaaaaaacgctatagttgcaaggactaaaattatatttaaacc |
442 |
Q |
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||||||||||||||||| ||||| ||||| |||||||||| ||||||||||| |
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| T |
22159389 |
gattaaaaccaaaaaacactataattgcatggactaaaatcatatttaaacc |
22159338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 391 - 442
Target Start/End: Complemental strand, 22218097 - 22218046
Alignment:
| Q |
391 |
gattaaaaccaaaaaacgctatagttgcaaggactaaaattatatttaaacc |
442 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||||| ||||||||||| |
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| T |
22218097 |
gattaaaaccaaaaaacactataattgcatggactaaaatcatatttaaacc |
22218046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 354 - 444
Target Start/End: Complemental strand, 50597351 - 50597261
Alignment:
| Q |
354 |
atttgcagagatttaatccaatcaaaaaaccttacaagattaaaaccaaaaaacgctatagttgcaaggactaaaattatatttaaaccta |
444 |
Q |
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| T |
50597351 |
atttgcagggactaaatccaaacaaaaaaacatactagactaaaactaaaaaacgttacaattgcagggactaaaatcatatttaaaccta |
50597261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 38305977 - 38306021
Alignment:
| Q |
394 |
taaaaccaaaaaacgctatagttgcaaggactaaaattatattta |
438 |
Q |
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|||||||||||||| ||||| |||||||||||||||| ||||||| |
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| T |
38305977 |
taaaaccaaaaaacactataattgcaaggactaaaatcatattta |
38306021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 18953438 - 18953375
Alignment:
| Q |
377 |
aaaaaaccttacaagattaaaaccaaaaaacgctatagttgcaaggactaaaattatatttaaa |
440 |
Q |
| |
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|||||| ||||||| | |||||||||| ||||||||||||| | ||||||||| ||||||||| |
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| T |
18953438 |
aaaaaaacttacaaaactaaaaccaaataacgctatagttggatagactaaaatcatatttaaa |
18953375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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