View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15280_low_4 (Length: 628)
Name: NF15280_low_4
Description: NF15280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15280_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-138; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 341 - 618
Target Start/End: Complemental strand, 9196996 - 9196720
Alignment:
| Q |
341 |
taaccttttggttggccaaagtccaactaaattcaggtatgagtgaatgttaacccgtttcaaataataggaatcctaccttgctttcacttttagatat |
440 |
Q |
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| T |
9196996 |
taaccttttggttggccaaagtccaactaaattcaggtatgagtgaatgttaacccgtttcaaataataggaatcctaacttgctttcacttttagatat |
9196897 |
T |
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| Q |
441 |
aggttatgtgagtgaatgttatgtgctcatgcatactagataaaacacttgttgtctaccctattctccatttctctccacttgaggagcatttaatgca |
540 |
Q |
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| T |
9196896 |
aggttatgtgagtgaatgttatgtgctcatgcatactagataaaacac-tgttgtctaccctattctccatttctctccacctgaggagcgtttaatgca |
9196798 |
T |
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| Q |
541 |
caaatgtcagtggcaaagtagccgatttttctaaggcataagctcgaaaagttatacatgaatatatacctacctatg |
618 |
Q |
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| T |
9196797 |
caaatgtcagtggcaaagtagccgatttttctatggcataagctcgaaaagttatacatgaatatagacctacctatg |
9196720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 9197815 - 9197617
Alignment:
| Q |
18 |
agatttaatgcagatataggataattctattattatgtttcatatggttgtgttattttttattatatggttctgttatcatttcttgaaagagaagtga |
117 |
Q |
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| T |
9197815 |
agatttaatgcagatataggataattctattattatgtttcatatggttgtgttattttttattatatggttctgttatcatttcttgaaagagaagtga |
9197716 |
T |
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| Q |
118 |
gttatgtttatgaatttatttgtagtaagcaataactaaggtcttctttatattgttgattgttgatgaaattagtttatatggaaatacattctatag |
216 |
Q |
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| T |
9197715 |
gttatgtttatgaatttatttgtagtaagcaataactaaggtcttctttatattgttgattgttgatgaaattagtttatatggaaatacattctatag |
9197617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 9197570 - 9197513
Alignment:
| Q |
264 |
gggaaaaggattatgataatttataatttgatcggagagtaagtaaaactcgactaat |
321 |
Q |
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| T |
9197570 |
gggaaaaggattatgataatttataatttgatcggagagcaagtaaaactcgactaat |
9197513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 576 - 614
Target Start/End: Original strand, 27128591 - 27128629
Alignment:
| Q |
576 |
gcataagctcgaaaagttatacatgaatatatacctacc |
614 |
Q |
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| T |
27128591 |
gcataagctcgaaaagttatacatgaatatagacctacc |
27128629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 547 - 615
Target Start/End: Original strand, 39534923 - 39534992
Alignment:
| Q |
547 |
tcagtggcaaagtagccgatt-tttctaaggcataagctcgaaaagttatacatgaatatatacctacct |
615 |
Q |
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| T |
39534923 |
tcagtggcaaaatagtcgattatttatatgacataagctcgaaaagttatacatgaatatagacctacct |
39534992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 566 - 615
Target Start/End: Original strand, 39420052 - 39420101
Alignment:
| Q |
566 |
tttttctaaggcataagctcgaaaagttatacatgaatatatacctacct |
615 |
Q |
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| T |
39420052 |
tttttctatgacataagctcgaaaagttatacataaatatagacctacct |
39420101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 577 - 615
Target Start/End: Complemental strand, 14727419 - 14727381
Alignment:
| Q |
577 |
cataagctcgaaaagttatacatgaatatatacctacct |
615 |
Q |
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| T |
14727419 |
cataagctcgaaaagttatacatgaatatagacctacct |
14727381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 583 - 615
Target Start/End: Original strand, 12830463 - 12830495
Alignment:
| Q |
583 |
ctcgaaaagttatacatgaatatatacctacct |
615 |
Q |
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| T |
12830463 |
ctcgaaaagttatgcatgaatatatacctacct |
12830495 |
T |
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