View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15280_low_5 (Length: 591)
Name: NF15280_low_5
Description: NF15280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15280_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 37147493 - 37147161
Alignment:
| Q |
1 |
gaactaacttaaaccataggattattacatcagtaactaactttctagtttacttgctatgcaagtcatcactatcttccttggccgttgcttctatctc |
100 |
Q |
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| T |
37147493 |
gaactaacttaaaccataggattattacatcagtaactaactttctagtttacttgctatgcaagtcatcactatcttccttggcccttgcttctatctc |
37147394 |
T |
|
| Q |
101 |
tattatttgcgtgatgcaatatccccacaagttggtggttgataaatgttgatcatccccaacttcttgacggctgaagctggactttgtcgttcacatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37147393 |
tattatttgcgtgatgcaatatccccacaagttggtggttgataaatgttgatcatccccaacttcttgacggctgaagctggactttgtcgttcacatg |
37147294 |
T |
|
| Q |
201 |
tctttcaatggtgggttttaaccggcgacaaatctgttggttttaaggtagtnnnnnnnnnnntcaggatttttgttaagaactggataggttctttgat |
300 |
Q |
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| T |
37147293 |
tctttcaatggtgggttttaaccggcgacaaatctgttggttttaaggtagtaaaaaaaaaaatcaggatttttgttaagaactgaataggttctttgat |
37147194 |
T |
|
| Q |
301 |
ggttaaagctccaggatccggtgaatgttacat |
333 |
Q |
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| T |
37147193 |
ggttaaagctccaggatccggtgaatgttacat |
37147161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 336 - 576
Target Start/End: Complemental strand, 37147131 - 37146893
Alignment:
| Q |
336 |
ttgagtagttacgagttgggtttctcatttgtggtcaatgtttctgacttgtgattctattattcctttttagagttgttaagcacatcaagtttcaaag |
435 |
Q |
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| T |
37147131 |
ttgagtagttacgagttgggtttctcattcgtggtcaatgtttctgacttgtgattctcttattcctttttagagttgttaagcacatcaagtttcaaag |
37147032 |
T |
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| Q |
436 |
tttgttttgtcgacgccgcaccggtcccgctgtaacttgtgatatcttgttcattctttatgtttgattgagattgttggactcagaagagtgttctgct |
535 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37147031 |
tttgttttgtcgacgccgcaccggt-ccgctgtaacttgtgatatcttgttcatt-tttatgtttgattgagattgttggactcagaagagtgttctgct |
37146934 |
T |
|
| Q |
536 |
tgctgcgttgtagggcgtttggttcttggtttcgttctgtg |
576 |
Q |
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| T |
37146933 |
tgctgcgttgtagggcgtttggttcttggtttcgttctgtg |
37146893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 445
Target Start/End: Complemental strand, 32040 - 31961
Alignment:
| Q |
366 |
gtggtcaatgtttctgacttgtgattctattattcctttttagagttgttaagcacatcaagtttcaaagtttgttttgt |
445 |
Q |
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|||||| |||| | |||||| ||||||| | ||||||||||||||||||| |||| | ||||||| |||||||||||| |
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| T |
32040 |
gtggtcgatgtgtttgacttttgattctttgattcctttttagagttgttgagcattgctagtttcatagtttgttttgt |
31961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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