View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15280_low_6 (Length: 590)
Name: NF15280_low_6
Description: NF15280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15280_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 19 - 580
Target Start/End: Complemental strand, 14134433 - 14133872
Alignment:
| Q |
19 |
aggtgtgggtagtgggggaccctttgcagatagagcttgtttatttttacatcatgatccaatgaaactccacaagaaaaaagaaagatatataattgaa |
118 |
Q |
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| T |
14134433 |
aggtgtgggtagtgggggaccctttgcagatagagcttgtttatttttacatcatgatccaatgaaactccacaagaaaaaagaaagatatataattgaa |
14134334 |
T |
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| Q |
119 |
cagggaaagtttagttgatgatataatttcatgtccctaaagtggtcaaaatgttattgaggtgggggaattaaatagagtgcatttttcttacccgtga |
218 |
Q |
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| T |
14134333 |
cagggaaagtttagttgatgatataatttcatgtccctaaagtggtcaaaatgttattgaggtgggggaattaaatagagtgcatttttcttacccgtga |
14134234 |
T |
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| Q |
219 |
cttagnnnnnnngaaaacttgagtagcatatgtttataatcttagccttaaatcattttatatgtgccattttatcaactctatcacccaattcactctc |
318 |
Q |
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| T |
14134233 |
cttagaaaaaaagaaaacttgagtagcatatatttataatcttagccttaaatcattttatatgtgccattttatcaactctatcacccaattcactctc |
14134134 |
T |
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| Q |
319 |
tgaaaaaatttcttcttccttaaatttcaaaccctttgagactcttttcaagatgacaacaaaggaaatgaaagttcaaatttcatcaagaaatgatgtg |
418 |
Q |
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| T |
14134133 |
tgaaaaaatttcttcttccttaaatttcaaaccctttgagactcttttcaagatgacaacaaaggaaatgaaagttcaaatttcatcaagaaatgatgtg |
14134034 |
T |
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| Q |
419 |
attcaacaaggtggtcttttgagacaagcaagtatgaacaagaacaattgtttatgctctccaacaacacatgctggatcatttaggtgtaggctacatc |
518 |
Q |
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| T |
14134033 |
attcaacaaggtggtcttttgagacaagcaagtatgaacaagaacaattgtttatgctctccaacaacacatgctggatcatttaggtgtaggctacatc |
14133934 |
T |
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| Q |
519 |
gtacacctagtctcataaggacaaaaagtatggagtcctcatcatctactcatggttctgtg |
580 |
Q |
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| T |
14133933 |
gtacacctagtctcattaggacaaaaagtatggagtcctcatcatctactcatggttctgtg |
14133872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 531
Target Start/End: Complemental strand, 29023883 - 29023776
Alignment:
| Q |
424 |
acaaggtggtcttttgagacaagcaagtatgaacaagaacaattgtttatgctctccaacaacacatgctggatcatttaggtgtaggctacatcgtaca |
523 |
Q |
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||||||||| ||| |||||||| | ||||||| ||| | |||||| |||| || |||||||||||| |||| |||||| | |||||||| ||||||| |
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| T |
29023883 |
acaaggtggacttatgagacaacctagtatgaccaaaacaaattgtctatgttcaccaacaacacatcctggttcatttcgttgtaggcttcatcgtagt |
29023784 |
T |
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| Q |
524 |
cctagtct |
531 |
Q |
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|||||||| |
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| T |
29023783 |
cctagtct |
29023776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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