View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15280_low_8 (Length: 534)
Name: NF15280_low_8
Description: NF15280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15280_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 47920249 - 47919754
Alignment:
| Q |
1 |
tgaccatttgacaatatatagatcagcaaactcgtcgtcaacatcatcaccgcaagattttgaagtcaaggtgaatgatatttcaacgcctgcaatgact |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47920249 |
tgaccatttgacaatatatagatcagcaaactcgtcgtcaacatcatcaccgccagattttgaagtcaaggtgaatgagatttcaacgcctgcaatgact |
47920150 |
T |
|
| Q |
101 |
ttgagtaaaccttgaagcacggcagctagatgttttctccaccattcttccagctcaattcctgaccacttaatttcaagcatagcaagaatgcacaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47920149 |
ttgagtaaaccttgaagcacggcagctagatgttttctccaccattcttccagctcaattcctgaccacttaatttcaagcatagcaagaatgcacaaag |
47920050 |
T |
|
| Q |
201 |
tcacattaatagccaagaggtaaaccaaaaagttgacattgagtgtttggacaatgaactgtccagagaggagggaaagtgaatggatagattccaacat |
300 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47920049 |
tcacattaatagccaagaggtaaaccaata---------------------caatgaactgtccagagaggagggaaagtgaatggatagattccaacat |
47919971 |
T |
|
| Q |
301 |
taaggtatgctatcctctgaagaaatttcattcttcgggaggccataattgcattgtttttcgagaagaatatttcaactgagccagtagcccatctaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47919970 |
taaggtatgctatcctctgaagaaatttcattcttcgggaggccataattgcattgtttttcgagaagaatatttcaactgagccagtagcccatctaag |
47919871 |
T |
|
| Q |
401 |
aacctgatgggagcagttccgcggaaggcatctagtttggttacacagtaaactgacttccatcctctattatgcatcctataacaagtgaccacatcct |
500 |
Q |
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| T |
47919870 |
aacctgatgggagcagttccgcggaaggcgtctagtttagttacacagtaaactgacttccatcctctattatgcatcctataacaagtgaccacatcct |
47919771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 517
Target Start/End: Complemental strand, 44634988 - 44634907
Alignment:
| Q |
436 |
tttggttacacagtaaactgacttccatcctctattatgcatcctataacaagtgaccacatcctcagtaactgatccatat |
517 |
Q |
| |
|
|||||| ||||||||||||||| |||| |||||||| ||||| || |||| || || ||||| || |||||||| |||||| |
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| T |
44634988 |
tttggtcacacagtaaactgacctccaccctctattgtgcattctgtaaccggtaacaacatcttctgtaactgaaccatat |
44634907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 277 - 516
Target Start/End: Original strand, 29917208 - 29917469
Alignment:
| Q |
277 |
aagtgaatggatagattccaacattaaggtatgctatcctctgaagaaatttcattcttcgggaggccataattgcattgtttttcgagaagaatatttc |
376 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || |
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| T |
29917208 |
aagtgaatggataaattccaacattaaggtatgctatcctctgaagaaatttcattcttcgggtggccataattgcattgtttttagagaagaatatctc |
29917307 |
T |
|
| Q |
377 |
aactgagccagtagcccatctaagaacc----------------------tgatgggagcagttccgcggaaggcatctagtttggttacacagtaaact |
454 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |||| ||||||||||||||| |
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| T |
29917308 |
aactgagccagtagcccatctaagaacctgatgcaacctatcagtgagattgatgggagcagttccacggaaggcgtcacgtttagttacacagtaaact |
29917407 |
T |
|
| Q |
455 |
gacttccatcctctattatgcatcctataacaagtgaccacatcctcagtaactgatccata |
516 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
29917408 |
gacttccatcctctattatgcatcctataaccagtgaccacatcctcagtaactgatccata |
29917469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 134 - 281
Target Start/End: Original strand, 29917027 - 29917174
Alignment:
| Q |
134 |
tttctccaccattcttccagctcaattcctgaccacttaatttcaagcatagcaagaatgcacaaagtcacattaatagccaagaggtaaaccaaaaagt |
233 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
29917027 |
tttctccaccattcttccagctcaattcctgaccacttaatttcaagcacagcaagaatgcacaaagtcacagtaatagccaagaggtaagccaaaaaag |
29917126 |
T |
|
| Q |
234 |
tgacattgagtgtttggacaatgaactgtccagagaggagggaaagtg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
29917127 |
tgacattgagtgtttggacaatgaactgtccagagaagagggagagtg |
29917174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 29916861 - 29916993
Alignment:
| Q |
1 |
tgaccatttgacaatatatagatcagcaaactcgtcgtcaacatcatcaccgcaagattttgaagtcaaggtgaatgatatttcaacgcctgcaatgact |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| |||||||| ||| |
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| T |
29916861 |
tgaccatttgacaatatacagatcagcatactcgtcgtcaacatcatcaccgccagattttgaagtcaatgtgaatgagatttcaatgcctgcaacaact |
29916960 |
T |
|
| Q |
101 |
ttgagtaaaccttgaagcacggcagctagatgt |
133 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
29916961 |
ttgagtaaaccttgaagcacggcagctagatgt |
29916993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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