View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15281_high_1 (Length: 559)

Name: NF15281_high_1
Description: NF15281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15281_high_1
NF15281_high_1
[»] chr6 (5 HSPs)
chr6 (37-204)||(26808676-26808843)
chr6 (200-269)||(26809000-26809069)
chr6 (216-267)||(26719466-26719517)
chr6 (350-430)||(26848336-26848415)
chr6 (352-410)||(27667818-27667876)
[»] chr1 (3 HSPs)
chr1 (216-269)||(52684301-52684354)
chr1 (202-264)||(52978437-52978499)
chr1 (200-266)||(2703526-2703592)
[»] chr8 (1 HSPs)
chr8 (216-269)||(36089707-36089760)
[»] chr3 (1 HSPs)
chr3 (216-269)||(33718093-33718146)
[»] chr7 (1 HSPs)
chr7 (216-269)||(18931397-18931450)
[»] chr2 (1 HSPs)
chr2 (327-428)||(17994141-17994244)
[»] scaffold0013 (1 HSPs)
scaffold0013 (200-251)||(13605-13656)


Alignment Details
Target: chr6 (Bit Score: 96; Significance: 8e-47; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 26808676 - 26808843
Alignment:
Q  37 aagaacttttaattaatgaaaggatccatgttgagcttaaattgttagagagtagttcaaattttaagtatcatgaggaacaagcacaattgagaatccc 136  Q
    ||||| ||||||  |||||| |||||||||||||||||||||||||| ||||||| |||||||| || || ||||| |||||||| ||| ||||||||      
T  26808676 aagaatttttaaaaaatgaatggatccatgttgagcttaaattgttaaagagtagctcaaatttcaactaacatgacgaacaagcgcaaatgagaatcga 26808775  T
Q  137 attgtgcggggggaaagaaacatggaggtcctttgagttatttaattgtgcaaggaaggagtattctc 204  Q
     |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26808776 cttgtgcaggggggaagaaacatggaggtcctttgagttatttaattgtgcaaggaagaagtattctc 26808843  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 26809000 - 26809069
Alignment:
Q  200 ttctctctgcaactctattttgttgaggtgagttaacacatgtactttgatgaactatcccattttccat 269  Q
    |||||||||||| || | |||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  26809000 ttctctctgcaattccactttgatgaggtgagttaacagatgtactttgatgaactatcccattttccat 26809069  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 26719466 - 26719517
Alignment:
Q  216 attttgttgaggtgagttaacacatgtactttgatgaactatcccattttcc 267  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  26719466 attttgttgaggagagttaacacatgtactttgataaactatcccatgttcc 26719517  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 430
Target Start/End: Original strand, 26848336 - 26848415
Alignment:
Q  350 aggttgtacaataattatgtcactggtccacacggctaatggaaaattagaagaatgtttcgctactaat-ttaaatgcaca 430  Q
    |||| ||||||||||||||  |||||||||||||||||  ||||||| ||||| | ||||||  |||||| |||||||||||    
T  26848336 aggtggtacaataattatg--actggtccacacggctagaggaaaatgagaaggaggtttcgtgactaatgttaaatgcaca 26848415  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 27667876 - 27667818
Alignment:
Q  352 gttgtacaataattatgtcactggtccacacggctaatggaaaattagaagaatgtttc 410  Q
    |||| ||||||||| ||| | |||||||||||||||| ||||||| ||||| |||||||    
T  27667876 gttgaacaataattgtgtgaatggtccacacggctaaaggaaaatgagaaggatgtttc 27667818  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 52684301 - 52684354
Alignment:
Q  216 attttgttgaggtgagttaacacatgtactttgatgaactatcccattttccat 269  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  52684301 attttgttggggtgagttaacacatgtactttgatgaactatcccattttccat 52684354  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 52978437 - 52978499
Alignment:
Q  202 ctctctgcaactctattttgttgaggtgagttaacacatgtactttgatgaactatcccattt 264  Q
    |||| ||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  52978437 ctctatgcaattccattttattggggtgagttaacacatgtactttgatgaactatcccattt 52978499  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 2703526 - 2703592
Alignment:
Q  200 ttctctctgcaactctattttgttgaggtgagttaacacatgtactttgatgaactatcccattttc 266  Q
    |||||||||||| || ||||||||| |||||||||||||||| ||||||||| || || ||||||||    
T  2703526 ttctctctgcaattccattttgttggggtgagttaacacatgaactttgatgtacaattccattttc 2703592  T

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Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 36089707 - 36089760
Alignment:
Q  216 attttgttgaggtgagttaacacatgtactttgatgaactatcccattttccat 269  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  36089707 attttgttggggtgagttaacacatgtactttgatgaactatctcattttccat 36089760  T

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Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 33718146 - 33718093
Alignment:
Q  216 attttgttgaggtgagttaacacatgtactttgatgaactatcccattttccat 269  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  33718146 attttgttggggtaagttaacacatgtactttgatgaactatcccattttccat 33718093  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 18931450 - 18931397
Alignment:
Q  216 attttgttgaggtgagttaacacatgtactttgatgaactatcccattttccat 269  Q
    ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||    
T  18931450 attttgttggggtgagctaacacatgtactttgctgaactatcccattttccat 18931397  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 327 - 428
Target Start/End: Complemental strand, 17994244 - 17994141
Alignment:
Q  327 aaagtgacagtgggaggaaaa-tgaggttgtacaataattatgtcactggtccacacggctaatggaaaattagaagaatgtttcgctactaat-ttaaa 424  Q
    |||||||| |||||||||||| |||||| || |||||||| ||| |||||||||||||||||  ||| ||| ||||| | ||||||| ||| || |||||    
T  17994244 aaagtgactgtgggaggaaaaatgaggtagtgcaataattgtgtgactggtccacacggctataggagaatgagaaggaagtttcgccactgatgttaaa 17994145  T
Q  425 tgca 428  Q
    ||||    
T  17994144 tgca 17994141  T

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Target: scaffold0013 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 13656 - 13605
Alignment:
Q  200 ttctctctgcaactctattttgttgaggtgagttaacacatgtactttgatg 251  Q
    |||||||||||| || ||||| ||| |||||||||||||||| |||||||||    
T  13656 ttctctctgcaattccatttttttggggtgagttaacacatgaactttgatg 13605  T

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