View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15281_high_11 (Length: 206)

Name: NF15281_high_11
Description: NF15281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15281_high_11
NF15281_high_11
[»] chr5 (2 HSPs)
chr5 (66-189)||(40934785-40934908)
chr5 (130-189)||(38838703-38838762)
[»] chr6 (2 HSPs)
chr6 (66-189)||(11233768-11233891)
chr6 (130-189)||(8671410-8671469)
[»] chr1 (3 HSPs)
chr1 (22-189)||(24279159-24279323)
chr1 (130-189)||(24278477-24278537)
chr1 (134-189)||(30508424-30508479)
[»] chr3 (1 HSPs)
chr3 (66-189)||(18558763-18558886)
[»] scaffold0023 (1 HSPs)
scaffold0023 (130-189)||(148403-148462)
[»] chr8 (2 HSPs)
chr8 (130-189)||(3301724-3301783)
chr8 (113-189)||(25556727-25556805)
[»] chr4 (3 HSPs)
chr4 (113-189)||(723833-723911)
chr4 (68-110)||(1677458-1677500)
chr4 (68-110)||(1683986-1684028)
[»] chr7 (1 HSPs)
chr7 (113-189)||(360174-360250)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 66 - 189
Target Start/End: Original strand, 40934785 - 40934908
Alignment:
Q  66 gtgacaatatatttccactttttgattaaaagagaatttcttgccagaaaatatattttgcagcttaatttcgaagtctcttatcgattttgtttatgtg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  40934785 gtgacaatatatttccactttttgattaaaagagaatttcttgccagaaaatatattttgcaacttaatttcgaagtctcttatcgattttgtttatgtt 40934884  T
Q  166 gcaattattttttggtgcatatac 189  Q
    ||||||||||||||||||||||||    
T  40934885 gcaattattttttggtgcatatac 40934908  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 38838703 - 38838762
Alignment:
Q  130 ttaatttcgaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatac 189  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38838703 ttaatttcgaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatac 38838762  T

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Target: chr6 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 66 - 189
Target Start/End: Original strand, 11233768 - 11233891
Alignment:
Q  66 gtgacaatatatttccactttttgattaaaagagaatttcttgccagaaaatatattttgcagcttaatttcgaagtctcttatcgattttgtttatgtg 165  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  11233768 gtgacaatatatttccactttttgattaaaaaagaatttcttgccagaaaatatattttgcaacttaatttcgaagtctcttatcgattttgtttatgtt 11233867  T
Q  166 gcaattattttttggtgcatatac 189  Q
    ||||||||||||||||||||||||    
T  11233868 gcaattattttttggtgcatatac 11233891  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 8671410 - 8671469
Alignment:
Q  130 ttaatttcgaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatac 189  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8671410 ttaatttcgaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatac 8671469  T

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Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 24279323 - 24279159
Alignment:
Q  22 cttttttgttttgaagaaaaattttatgatcaatannnnnnnnngtgacaatatatttccactttttgattaaaagagaatttcttgccagaaaatatat 121  Q
    |||||||||||||||||||||||| ||||||||||         ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  24279323 cttttttgttttgaagaaaaattt-atgatcaatattttttt--gtgacaatatatttccactttttaattaaaagagaatttcttaccagaaaatatat 24279227  T
Q  122 tttgcagcttaatttcgaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatac 189  Q
    |||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24279226 tttgcaacttaatttcaaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatac 24279159  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 24278537 - 24278477
Alignment:
Q  130 ttaatttcgaagtctcttatcgatttt-gtttatgtggcaattattttttggtgcatatac 189  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  24278537 ttaattttgaagtctcttatcgatttttgtttatgttgcaattattttttggtgcatatac 24278477  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 30508424 - 30508479
Alignment:
Q  134 tttcgaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatac 189  Q
    |||||||| |||||||| ||||||||||| | |||||| |||||||||||||||||    
T  30508424 tttcgaaggctcttatcaattttgtttattttgcaattgttttttggtgcatatac 30508479  T

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Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 66 - 189
Target Start/End: Original strand, 18558763 - 18558886
Alignment:
Q  66 gtgacaatatatttccactttttgattaaaagagaatttcttgccagaaaatatattttgcagcttaatttcgaagtctcttatcgattttgtttatgtg 165  Q
    |||||||||||||| | ||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||     
T  18558763 gtgacaatatattttcgctttttgattaaaagtgaatttcttgccagaaaaaatattttgcaacttaatttcgaagtctcttatcgattttgtttatgtt 18558862  T
Q  166 gcaattattttttggtgcatatac 189  Q
    ||||||||||||||||||||||||    
T  18558863 gcaattattttttggtgcatatac 18558886  T

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Target: scaffold0023 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 148403 - 148462
Alignment:
Q  130 ttaatttcgaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatac 189  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  148403 ttaatttcgaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatac 148462  T

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Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 3301724 - 3301783
Alignment:
Q  130 ttaatttcgaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatac 189  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  3301724 ttaatttcgaagtttcttatcgattttgtttatgttgcaattattttttggtgcatatac 3301783  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 25556727 - 25556805
Alignment:
Q  113 aaaatatattttgcagc-ttaatttcgaagtctcttatcgattttgtttatgtggcaattatttt-ttggtgcatatac 189  Q
    |||||||||||| || | ||||||||| ||||||||||| ||||||||||| | ||||||||||| |||||||||||||    
T  25556727 aaaatatattttacaaccttaatttcggagtctcttatcaattttgtttatcttgcaattattttgttggtgcatatac 25556805  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 723833 - 723911
Alignment:
Q  113 aaaatatattttgcagc-ttaatttcgaagtctcttatcgattttgtttatgtggcaattatttt-ttggtgcatatac 189  Q
    |||||||||||| || | ||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||    
T  723833 aaaatatattttacaaccttaatttcgaagtctcttatcaattttgtttattttgcaattattttgttggtgcatatac 723911  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 1677458 - 1677500
Alignment:
Q  68 gacaatatatttccactttttgattaaaagagaatttcttgcc 110  Q
    |||||||||||||||||||||||||  |||| |||||||||||    
T  1677458 gacaatatatttccactttttgatttgaagaaaatttcttgcc 1677500  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 1683986 - 1684028
Alignment:
Q  68 gacaatatatttccactttttgattaaaagagaatttcttgcc 110  Q
    |||||||||||||||||||||||||  |||| |||||||||||    
T  1683986 gacaatatatttccactttttgatttgaagaaaatttcttgcc 1684028  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 360250 - 360174
Alignment:
Q  113 aaaatatattttgcagc-ttaatttcgaagtctcttatcgattttgtttatgtggcaattatttt-ttggtgcatatac 189  Q
    |||||||||||| || | ||||||||||||||||  ||| ||||||||||| | ||||||||||| |||||||||||||    
T  360250 aaaatatattttacaaccttaatttcgaagtctc--atcaattttgtttattttgcaattattttgttggtgcatatac 360174  T

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