View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15281_high_6 (Length: 340)
Name: NF15281_high_6
Description: NF15281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15281_high_6 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 340
Target Start/End: Complemental strand, 48100433 - 48100109
Alignment:
| Q |
16 |
atcagtgactgaaagaagatggtgaaagtagttatgcgtgtgtatttagatatttgttataactgaaatttattggcaatgcagtgcgagaatccaactg |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48100433 |
atcagagactgaaagaagatggtgaaagtagttatgcttgtgtatttagatatttgttataactgaaatttattggcaatgcagtgcgagaatccaactg |
48100334 |
T |
|
| Q |
116 |
tggaactatgggctgatagtgtctccttacaaccattcaccaagaaacaatggagatcacagcaagacgatagcgttgagagggtaagctagtccaaatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48100333 |
tggaactatgggctgatagtgtctccttacaaccattcaccaagaaacaatggagatcacagcaagacgatagcgttgagagggtaagctagtccaaatt |
48100234 |
T |
|
| Q |
216 |
ttcgatactactcgctcgacattttagacattaaatttacataaaagtcaatgcctcttatcttattttcactttagatcctagtaatcatgttgtcagc |
315 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48100233 |
ttcaatactactcactcgacattttagacattaaatttacataaaagtcaatgcctcttatcttattttcactttagatcctagtaatcatgttgtcagc |
48100134 |
T |
|
| Q |
316 |
aacagaaatgaacttaatagcagac |
340 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
48100133 |
aacagaaatgaacttaatagcagac |
48100109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 76 - 212
Target Start/End: Complemental strand, 48067331 - 48067189
Alignment:
| Q |
76 |
aactgaaatttattggcaatgcagtgcgagaatccaact------gtggaactatgggctgatagtgtctccttacaaccattcaccaagaaacaatgga |
169 |
Q |
| |
|
|||||||||||| | ||||||||| || ||||||||| | |||||| ||||| ||||||||||||| ||||||||||||| ||| | |||||||| |
|
|
| T |
48067331 |
aactgaaatttactagcaatgcagagcaagaatccaagtccaggtgtggaattatggactgatagtgtctctttacaaccattcaacaaaacacaatgga |
48067232 |
T |
|
| Q |
170 |
gatcacagcaagacgatagcgttgagagggtaagctagtccaa |
212 |
Q |
| |
|
||||||| |||| ||| ||| |||||||||||||||| ||||| |
|
|
| T |
48067231 |
gatcacaccaagccgacagcattgagagggtaagctaatccaa |
48067189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 48063344 - 48063232
Alignment:
| Q |
94 |
atgcagtgcgagaatccaactgtggaactatgggctgatagtgtctccttacaaccattcaccaagaaacaatggagatcacagcaagacgatagcgttg |
193 |
Q |
| |
|
|||||| | |||||||||| ||||||| |||||| | ||||||||||||||||||||||||||| | |||||||| ||||| ||||| ||| ||| |
|
|
| T |
48063344 |
atgcagagtgagaatccaattgtggaattatgggttcatagtgtctccttacaaccattcaccagagagcaatggaggtcacaccaagatagcagcattg |
48063245 |
T |
|
| Q |
194 |
agagggtaagcta |
206 |
Q |
| |
|
||||||||||||| |
|
|
| T |
48063244 |
agagggtaagcta |
48063232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 48107005 - 48106936
Alignment:
| Q |
114 |
tgtggaactatgggctgatagtgtctccttacaaccattcaccaagaaacaatggagatcacagcaagac |
183 |
Q |
| |
|
||||||| |||||||||||||||| ||||| |||||||| || || || ||||||||||||| |||||| |
|
|
| T |
48107005 |
tgtggaaatatgggctgatagtgtgtccttgcaaccatttactaaaaaggaatggagatcacaccaagac |
48106936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University