View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15281_low_2 (Length: 499)

Name: NF15281_low_2
Description: NF15281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15281_low_2
NF15281_low_2
[»] chr8 (3 HSPs)
chr8 (5-326)||(16510234-16510555)
chr8 (396-484)||(16510624-16510715)
chr8 (134-181)||(41850686-41850733)
[»] chr6 (2 HSPs)
chr6 (136-181)||(20491659-20491704)
chr6 (106-181)||(10999994-11000069)
[»] chr7 (3 HSPs)
chr7 (116-181)||(8869738-8869803)
chr7 (134-181)||(8871340-8871387)
chr7 (114-181)||(8900193-8900260)
[»] chr3 (1 HSPs)
chr3 (106-178)||(43006928-43007000)
[»] chr4 (2 HSPs)
chr4 (120-163)||(22071797-22071840)
chr4 (116-181)||(22335547-22335611)
[»] chr5 (2 HSPs)
chr5 (137-182)||(12254652-12254697)
chr5 (117-178)||(31556271-31556332)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 326
Target Start/End: Original strand, 16510234 - 16510555
Alignment:
Q  5 gatttggattgaagaatctccaacctgcattgtatctgaaatcattagggatatgataaatcaataaaatatctctgtctactttnnnnnnnnnnnnnnn 104  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||                   
T  16510234 gatttggattgaagaatgtccaacctgcattgtatatgaaatcattagggatatgataaatcaataaaatatctctgtctactttcaaaaaaaataaaaa 16510333  T
Q  105 ntatcatatcctttttatgatatttatttaatgaaatatgagtttcttggtttgtatgatcaaaatttgggtttgttccaccaannnnnnnnaggtttgt 204  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  16510334 atatcatatcctttttatgatatttatttaatgaaatatgagtttcttggtttgtatgatcaaaatttgggtttgttccaccaattttttttaggtttgt 16510433  T
Q  205 ctatgagttttttgatatctatttgattaaattagaaaatattgttatcttaaattaaattaaaagatagattgtatagttttacaaatttttgtctacc 304  Q
     ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16510434 ttatgagttttttgatatctatttgattaaattaaaaaatattgttatcttaaattaaattaaaagatagattgtataattttacaaatttttgtctacc 16510533  T
Q  305 tttatcgtcaaataacttaagc 326  Q
    ||||||||||||||||||||||    
T  16510534 tttatcgtcaaataacttaagc 16510555  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 396 - 484
Target Start/End: Original strand, 16510624 - 16510715
Alignment:
Q  396 cgcaaagtaaaaaacaaacaatcttattacaaagaat---ttcttcttcttcttctcggaattctagaagactcctaacattcgcttctctg 484  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16510624 cgcaaagtaaaaaacaaacaatcttattacaaagaatttcttcttcttcttcttctcggaattctagaagactcctaacattcgcttctctg 16510715  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 41850733 - 41850686
Alignment:
Q  134 aatgaaatatgagtttcttggtttgtatgatcaaaatttgggtttgtt 181  Q
    |||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  41850733 aatgaaatctgagtttcttagtttgtatgataaaaatttgggtttgtt 41850686  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 20491704 - 20491659
Alignment:
Q  136 tgaaatatgagtttcttggtttgtatgatcaaaatttgggtttgtt 181  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||    
T  20491704 tgaaatatgaggttcttggtttgtatgatgaaaatttgggtttgtt 20491659  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 11000069 - 10999994
Alignment:
Q  106 tatcatatcctttttatgatatttatttaatgaaatatgagtttcttggtttgtatgatcaaaatttgggtttgtt 181  Q
    |||| |||| ||||||||| |||| ||||||||||| || |||| |  ||||||||||| ||||||||| ||||||    
T  11000069 tatcttatcatttttatgagatttttttaatgaaatctgggtttttaagtttgtatgatgaaaatttggatttgtt 10999994  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 8869803 - 8869738
Alignment:
Q  116 tttttatgatatttatttaatgaaatatgagtttcttggtttgtatgatcaaaatttgggtttgtt 181  Q
    |||| |||| |||| || |||||||| ||||||||||| |||||||||| || |||||||||||||    
T  8869803 ttttaatgagattttttcaatgaaatttgagtttcttgatttgtatgatgaagatttgggtttgtt 8869738  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 8871340 - 8871387
Alignment:
Q  134 aatgaaatatgagtttcttggtttgtatgatcaaaatttgggtttgtt 181  Q
    |||||||  ||||||||||| |||||||||| ||||||||||||||||    
T  8871340 aatgaaaattgagtttcttgatttgtatgatgaaaatttgggtttgtt 8871387  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 8900193 - 8900260
Alignment:
Q  114 cctttttatgatatttatttaatgaaatatgagtttcttggtttgtatgatcaaaatttgggtttgtt 181  Q
    ||||||||||| |||| ||||| ||||| || ||||||  ||||||||||| |||||||| |||||||    
T  8900193 cctttttatgagatttttttaaagaaatttgggtttctatgtttgtatgatgaaaatttgagtttgtt 8900260  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 43007000 - 43006928
Alignment:
Q  106 tatcatatcctttttatgatatttatttaatgaaatatgagtttcttggtttgtatgatcaaaatttgggttt 178  Q
    |||| |||| |||| |||| |||| || |||||||||||| |||| ||||||||||||| || ||||||||||    
T  43007000 tatcttatcattttaatgagattttttcaatgaaatatgaatttcatggtttgtatgatgaatatttgggttt 43006928  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 22071797 - 22071840
Alignment:
Q  120 tatgatatttatttaatgaaatatgagtttcttggtttgtatga 163  Q
    ||||| |||| ||||||||||| |||||||||||||||||||||    
T  22071797 tatgagatttgtttaatgaaatttgagtttcttggtttgtatga 22071840  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 22335547 - 22335611
Alignment:
Q  116 tttttatgatatttatttaatgaaatatgagtttcttggtttgtatgatcaaaatttgggtttgtt 181  Q
    ||||||||| |||| || |||||||| ||| ||||| |||||||||||| || |||||||||||||    
T  22335547 tttttatga-attttttcaatgaaatctgattttctaggtttgtatgatgaagatttgggtttgtt 22335611  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 12254652 - 12254697
Alignment:
Q  137 gaaatatgagtttcttggtttgtatgatcaaaatttgggtttgttc 182  Q
    |||||||||||||||  ||||||||||| |||| ||||||||||||    
T  12254652 gaaatatgagtttctatgtttgtatgataaaaaattgggtttgttc 12254697  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 31556271 - 31556332
Alignment:
Q  117 ttttatgatatttatttaatgaaatatgagtttcttggtttgtatgatcaaaatttgggttt 178  Q
    |||| ||| |||| |||| |||||| | |||||||||||||||||||| ||||||| |||||    
T  31556271 ttttgtgagatttttttattgaaatctaagtttcttggtttgtatgattaaaatttaggttt 31556332  T

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