View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15281_low_3 (Length: 499)
Name: NF15281_low_3
Description: NF15281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15281_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 7 - 481
Target Start/End: Original strand, 43873167 - 43873648
Alignment:
| Q |
7 |
tagattatactagaacaagcacaaagcacataaaagtaaaatcaaaattttatcagtgaaatattctagtaattagtaaatcaatgcttggttaccaaaa |
106 |
Q |
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| T |
43873167 |
tagataatactagaacaagcacaaagcacataaaagtaaaatcaaaattttatcagtgaaatattctagtaattagtaaatcaatgcttggttaccaaaa |
43873266 |
T |
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| Q |
107 |
aataacttaaatttctctaaaaaatactgaacccatcctgatatcttgaatccttatattttcaggccatgatccaaaatattatcattggataagtagt |
206 |
Q |
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| T |
43873267 |
aataacttaaatttctctaaaaaatactgaacacatcctgatatcttgaatccttatattttcaggccatgatccaaaatattatcattggataagtagt |
43873366 |
T |
|
| Q |
207 |
tgaaccataatgactagtgtcaccccattggtaaaagaaatgttcggaattgagcgtcaatttcaattttc-------aatgtaatattaattacttttt |
299 |
Q |
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| T |
43873367 |
tgaaccataatgactagtgtcaccccattggtaaaagaaatgttcggaattgagcgtcaatttcaattttcaatttttaatgtaatattaattacttttt |
43873466 |
T |
|
| Q |
300 |
ccaaattgtgtcatggagtaaagaatactattagcatcatcactcccaaaccattatttaatatatactgataaagaatagaacctttaagcggaggacc |
399 |
Q |
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| T |
43873467 |
ccaaattgtgtcatggagtaaagaatactattagcatcatcactcccaaaccattatttaatatatactgataaagaatagaacctttaagcggaggacc |
43873566 |
T |
|
| Q |
400 |
attttttggaggttatgtttgtattcttgaataggtacatgttgtctttcactagttcttccggacagagctgcatcgttag |
481 |
Q |
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| T |
43873567 |
attttttggaggttatgtttgtattcttgaataggtacatgttgtctttcactagttcttccggacagagctgaatcgttag |
43873648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 8941210 - 8941246
Alignment:
| Q |
263 |
tcaatttcaattttcaatgtaatattaattacttttt |
299 |
Q |
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||||||||| |||||||| |||||||||||||||||| |
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| T |
8941210 |
tcaatttcacttttcaatctaatattaattacttttt |
8941246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 16956341 - 16956377
Alignment:
| Q |
263 |
tcaatttcaattttcaatgtaatattaattacttttt |
299 |
Q |
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| T |
16956341 |
tcaatttcatttttcaatgcaatattaattacttttt |
16956377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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