View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15281_low_4 (Length: 379)
Name: NF15281_low_4
Description: NF15281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15281_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 15 - 361
Target Start/End: Complemental strand, 34350902 - 34350555
Alignment:
| Q |
15 |
tcacaactattttatatctttctctctcaagatgtatactctcatatgaggattagatcaaactcctgttttttattttatttctaataacaccc-taaa |
113 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| ||| |||| |
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| T |
34350902 |
tcacaactcttttatatctttctctctgaagatgtatactctcatatgaggtgtagatcaaacccttgttttttattttatttctaataacgcccctaaa |
34350803 |
T |
|
| Q |
114 |
agatcgtgttacactatggaatgacaaatatactcctaaaatgtaattaaattttcaattctatccaaaacccttcataaacctagaacggagtcattcc |
213 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34350802 |
agatcgtgttacactatggaatgacaaatatacccctaaaatgtaattaaattttcaattctatccaaaacccttcataaacctagaacggagtcattcc |
34350703 |
T |
|
| Q |
214 |
cacttagaaccgttcatatccacatgaactcaatttacttaagttatatgaactcggtttacgtatcaagtcatcttaattcacgtaaagtaggtttgca |
313 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34350702 |
cacttagaaccgttcatctccacatgaactcaatttacttaagttatatggacttggtttacgtatcaagtcatcttaattcacgtaaagttggtttgca |
34350603 |
T |
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| Q |
314 |
aactcagtttacataacctacataaactcagtttgcgtagcctacata |
361 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
34350602 |
aactcagtttacataacttacataaactcagtttatgtagcctacata |
34350555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 347
Target Start/End: Original strand, 458253 - 458287
Alignment:
| Q |
313 |
aaactcagtttacataacctacataaactcagttt |
347 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
458253 |
aaactcagtttacataacctacttaaactcagttt |
458287 |
T |
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