View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15281_low_5 (Length: 374)
Name: NF15281_low_5
Description: NF15281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15281_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 49406158 - 49406511
Alignment:
| Q |
1 |
ggaacccataatccatcaagaaaattatgcaaaaacaccccgtgatcacggtatgagaatgctagtatataagagccgctgcattgcaaatcacataacg |
100 |
Q |
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| T |
49406158 |
ggaacccataatccgtcaagaacattatgcaaaaacaccccgtggccacggtatgagaatgcttgtatatgagagccgctgcattgcaaatcacataacg |
49406257 |
T |
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| Q |
101 |
cctttgtgagcgctgagcaggaacttaaacctctttaaccattttccccaaatgtgcaaagatgtgtgatatatctcagtcaaaagtatcttactctgtt |
200 |
Q |
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| T |
49406258 |
cctttgtgagcgctgagcaggaacttaaacctctttaaccatttcccccaaatgtgcaaagatgtgtgatatatctca----aaagtatcttactctgtt |
49406353 |
T |
|
| Q |
201 |
tgatattcaattgcatagatttaaataataattttagattcatgatgaaccaagtactggtgtggactacatcctgttggtatttggccgttatgcttcg |
300 |
Q |
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| T |
49406354 |
tgatattcaattgcatagatttaaataataattttagattcatgatgaaccaagtactggtgtggactacatcctgttggtatttggccgttatgcttcg |
49406453 |
T |
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| Q |
301 |
tgtgatgaaaaattcttgcaatttccttcatgttctgtattgtgggatctaatctttt |
358 |
Q |
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| T |
49406454 |
tgtgatgaaaaattcttgcaatttccttcatgttctatattgtgggatctaatctttt |
49406511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 52270304 - 52269955
Alignment:
| Q |
1 |
ggaacccataatccatcaagaaaattatgcaaaaacaccccgtgatcacggtatgagaatgctagtatataagagccgctgcattgcaaatcacataacg |
100 |
Q |
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||||||||||||||||| ||| |||||||||||||||| |||| || ||||||||||| ||||||||| | ||| ||||||||||||||||| |
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| T |
52270304 |
ggaacccataatccatcctgaacattatgcaaaaacaccacgtggccatggtatgagaattctagtatat-----ctgctatgttgcaaatcacataacg |
52270210 |
T |
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| Q |
101 |
cctttgtgagcgctgagcaggaacttaaacctctttaaccattttccccaaatgtgcaaagatgtgtgatatatctcagtca-aaagtatcttactctgt |
199 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || |||| ||||| | |||||||||||||||| |
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| T |
52270209 |
cctttgtgagcactgagcaggaacttaaacctctttagccattttccccaaatg-----------gtcatatttctcaaactcaaagtatcttactctgc |
52270121 |
T |
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| Q |
200 |
ttgatattcaattgcatagatttaaataataattttagattcatg---atgaaccaagtactggt---gtggactacatcctgttggtatttggccgtta |
293 |
Q |
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||| ||||||||| || | |||||||||||||||||||||||||| |||||||||||| |||| ||||||||| |||| ||||||||||||||||| |
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| T |
52270120 |
ttggtattcaattacacaaatttaaataataattttagattcatgatgatgaaccaagtagtggtgtagtggactacttcctattggtatttggccgtta |
52270021 |
T |
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| Q |
294 |
tgcttcgtgtgatg-aaaaattcttgcaatttccttcatgttctgtattgtgggatctaatctttt |
358 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
52270020 |
tgcttcctgtgatgaaaaaattcttgcaatttccttcatgttttgtattgtgggatctaacctttt |
52269955 |
T |
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