View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15281_low_8 (Length: 266)
Name: NF15281_low_8
Description: NF15281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15281_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 47760624 - 47760385
Alignment:
| Q |
16 |
atgaccgactttcatatccaaattaaagcttcaatcctatatttgttggttacttgttaattattccaagacagagagcaatatcagcatggcaattgtt |
115 |
Q |
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| T |
47760624 |
atgaccgactttcatatccaaattaaagcttcaatcctatatttgttggttacttgttaattattccaagacagagagcaatatcagcatggcaattgtt |
47760525 |
T |
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| Q |
116 |
tcttgcaagttattacttaccttttattcttttctctttctcattacttttgtatctcaagccaaagcccaacctgattttctgtacaacttttgtata- |
214 |
Q |
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| T |
47760524 |
tcttgcaagttattacttaccttttattcttttctctttctcattacttttgtatctcaagccaaagcccaacctgattttctgtacaacttttgtaaaa |
47760425 |
T |
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| Q |
215 |
-----aatggcaactacacagccaatagcacctatcaaaa |
249 |
Q |
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| T |
47760424 |
acgataatggcaactacacagccaatagcacctatcaaaa |
47760385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 249
Target Start/End: Complemental strand, 47718442 - 47718264
Alignment:
| Q |
79 |
ttccaagacagagagcaatat-ca-gcatggcaattgtttcttgcaagttattacttaccttttattcttttctctttctcattacttttgtatctcaag |
176 |
Q |
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| T |
47718442 |
ttccaagacagagatcaatatacacgaatgacaactgtttctagcaagctattattttccttttattctgttctttttattatcattatcgtatctcaag |
47718343 |
T |
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| Q |
177 |
ccaaagcccaacctgattttctgtacaacttttgtataaa------tggcaactacacagccaatagcacctatcaaaa |
249 |
Q |
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| T |
47718342 |
cccaaggccaaccaaattttttgcgcaactattgtataaacaataatggcaactacacagccaatagcacctatcaaaa |
47718264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 249
Target Start/End: Complemental strand, 47713651 - 47713470
Alignment:
| Q |
79 |
ttccaagacagagagcaatat--cagcatggcaattgtttcttgcaagttattacttaccttttattcttttctctttctcattactttt---gtatctc |
173 |
Q |
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|||||||||||||| |||||| ||| ||| ||||||||||| ||||| ||||| || ||||||| ||||||||| || | |||| || ||||||| |
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| T |
47713651 |
ttccaagacagagatcaatatatcagaatgacaattgtttctagcaagctattattttccttttactcttttctcctttttattatcattatcgtatctc |
47713552 |
T |
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| Q |
174 |
aagccaaagcccaacctgattttctgtacaacttttgtataaa------tggcaactacacagccaatagcacctatcaaaa |
249 |
Q |
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| T |
47713551 |
aagcccagggccaaccagattttgtgcgctactcttgtataaacaataatggcaactacacagccaatagcacctatcaaaa |
47713470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 47746087 - 47746053
Alignment:
| Q |
215 |
aatggcaactacacagccaatagcacctatcaaaa |
249 |
Q |
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| T |
47746087 |
aatggcaactacacagccaatagcacctatcaaaa |
47746053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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