View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15281_low_9 (Length: 262)
Name: NF15281_low_9
Description: NF15281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15281_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 48099881 - 48100126
Alignment:
| Q |
1 |
ccatctctggtactcaaagtttgtgaggatgtaatggttcatcccacatccaagtggaaaatttgcctttgtttgtttgatgacaattgatgctccttcc |
100 |
Q |
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| T |
48099881 |
ccatctctggtactcaaagtttgtaaggatgtaatggttcatcccacatccaagtgggaaatttgcctttgtttgtttgatgacaattgatgctccttcc |
48099980 |
T |
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| Q |
101 |
atttctgttttgtttagatgagttacatggaatctcaccttgctcttgcgtacctgcagtttataaatcacaaaaatcattactagttttttctgctaca |
200 |
Q |
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| T |
48099981 |
atttctgttttgtttagatgagttacatggaatctcaccttgctcttgcgtacctgcagtttataaatcacaaaaatcattactagttttttctgctaca |
48100080 |
T |
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| Q |
201 |
gttctactaattctcacaatgtaatttggtctgctattaagttcat |
246 |
Q |
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| T |
48100081 |
gttctactaattctcacaatgtaatttggtctgctattaagttcat |
48100126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 48066936 - 48067094
Alignment:
| Q |
1 |
ccatctctggtactcaaagtttgtgaggatgtaatggttcatcccacatccaagtggaaaatttgcctttgtttgtttgatgacaattgatgctccttcc |
100 |
Q |
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| T |
48066936 |
ccatttctggtactcaatgtttgtgaggatgtgatagttcatcccacatccgaatgggaaatctgcctttgtttgtttgatgacaaccgttgctccttcc |
48067035 |
T |
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| Q |
101 |
atttctgttttgtttagatgagttacatggaatctcaccttgctcttgcgtacctgcag |
159 |
Q |
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| T |
48067036 |
aatgatgtttcgtttagatgatttacttggaatgtcaccttgctcttacgtacctgcag |
48067094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 48062847 - 48063016
Alignment:
| Q |
1 |
ccatctctggtactcaaagtttgtgaggatgtaatggttcatcccacatccaagtggaaaatttgcctttgtttgtttgatgacaattgatgctccttcc |
100 |
Q |
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|||| ||||||| ||| |||||||||||| | | |||||||| |||||||| ||||||||||||| |||||||||| || |||| || |||||||||| |
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| T |
48062847 |
ccatttctggtagtcactgtttgtgaggatatgacggttcatcgcacatccatatggaaaatttgcccttgtttgtttaataacaactgttgctccttcc |
48062946 |
T |
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| Q |
101 |
atttctgttttgtttagatgagttacatggaatctcaccttgctcttgcgtacctgcagtttataaatca |
170 |
Q |
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| T |
48062947 |
aacactgtttcatttggatgagttacctggaatctcaccctgctcttacgtacctgtaggttataaatca |
48063016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 170
Target Start/End: Original strand, 48106488 - 48106651
Alignment:
| Q |
7 |
ctggtactcaaagtttgtgaggatgtaatggttcatcccacatccaagtggaaaatttgcctttgtttgtttgatgacaattgatgctccttccatttct |
106 |
Q |
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| T |
48106488 |
ctggtagtcaatgtttgtgagtatatgatggttcatcccacatccaaatgggaaatctgcctttgtttgtgttatcacaactgttgctccttccaatgct |
48106587 |
T |
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| Q |
107 |
gttttgtttagatgagttacatggaatctcaccttgctcttgcgtacctgcagtttataaatca |
170 |
Q |
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| T |
48106588 |
gtttcatttacattacttacatggaatctcactctactcttacgtacctacaagttataaatca |
48106651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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