View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15282_high_1 (Length: 273)

Name: NF15282_high_1
Description: NF15282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15282_high_1
NF15282_high_1
[»] chr1 (2 HSPs)
chr1 (1-110)||(5032408-5032517)
chr1 (150-257)||(5032557-5032664)
[»] chr5 (5 HSPs)
chr5 (67-110)||(28663554-28663597)
chr5 (67-110)||(25590159-25590202)
chr5 (65-110)||(29948338-29948383)
chr5 (67-110)||(21154214-21154257)
chr5 (67-110)||(21161349-21161392)
[»] chr3 (1 HSPs)
chr3 (60-108)||(10937488-10937536)
[»] chr8 (3 HSPs)
chr8 (67-110)||(28350494-28350537)
chr8 (66-110)||(12642364-12642408)
chr8 (67-104)||(29185462-29185499)
[»] chr7 (1 HSPs)
chr7 (67-110)||(7578740-7578783)
[»] chr6 (1 HSPs)
chr6 (66-110)||(17190874-17190918)
[»] chr2 (5 HSPs)
chr2 (66-110)||(23453737-23453781)
chr2 (67-110)||(19084686-19084729)
chr2 (69-110)||(17830674-17830715)
chr2 (66-110)||(16443195-16443239)
chr2 (67-107)||(18557456-18557496)
[»] chr4 (1 HSPs)
chr4 (67-104)||(8563638-8563675)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 5032408 - 5032517
Alignment:
Q  1 tatttacatagctaaattgaatattttttagacatattttaccctaaaagtttaaaatctaataattgttatgaaattaatctaaaatattgcaagatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  5032408 tatttacatagctaaattgaatattttttagacatattttaccctaaaagtttaaaatctaatagttgttatgaaattaatctaaagtattgcaagatat 5032507  T
Q  101 tgtacaacat 110  Q
    ||||||||||    
T  5032508 tgtacaacat 5032517  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 5032557 - 5032664
Alignment:
Q  150 tatattgcattacttcacaagtgtgttctagggacatccacatcatattttcataacgaaaatctagttttggttgtttagcctttgggtctgcaccgtc 249  Q
    ||||||||||||||| |||||| | ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  5032557 tatattgcattactttacaagtatattctaggaacatctacatcatattttcataacgataatctagttttggttgtttggcctttgggtctgcaccgtc 5032656  T
Q  250 cgcacaac 257  Q
    ||||||||    
T  5032657 cgcacaac 5032664  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 28663554 - 28663597
Alignment:
Q  67 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28663554 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 28663597  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 25590202 - 25590159
Alignment:
Q  67 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 110  Q
    |||||||||||||||||||| ||||||| |||||||||||||||    
T  25590202 tgttatgaaattaatctaaagtattgcatgatattgtacaacat 25590159  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 29948338 - 29948383
Alignment:
Q  65 attgttatgaaattaatctaaaatattgcaagatattgtacaacat 110  Q
    |||||||||||||||||||||| ||| |||||||||||| ||||||    
T  29948338 attgttatgaaattaatctaaagtatggcaagatattgtgcaacat 29948383  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 21154257 - 21154214
Alignment:
Q  67 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 110  Q
    ||||||||||||||| |||  |||||||||||||||||||||||    
T  21154257 tgttatgaaattaatttaatgtattgcaagatattgtacaacat 21154214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 21161392 - 21161349
Alignment:
Q  67 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 110  Q
    ||||||||||||||| |||  |||||||||||||||||||||||    
T  21161392 tgttatgaaattaatttaatgtattgcaagatattgtacaacat 21161349  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 10937536 - 10937488
Alignment:
Q  60 taataattgttatgaaattaatctaaaatattgcaagatattgtacaac 108  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  10937536 taattattgttatgaaattaatctaaaatattgtaagatattttacaac 10937488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 28350494 - 28350537
Alignment:
Q  67 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 110  Q
    |||||||||||||||| ||| |||||||||||||||||||||||    
T  28350494 tgttatgaaattaatccaaagtattgcaagatattgtacaacat 28350537  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 12642364 - 12642408
Alignment:
Q  66 ttgttatgaaattaatctaaaatattgcaagatattgtacaacat 110  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||    
T  12642364 ttgttatgaaattaatcaaaagcattgcaagatattgtacaacat 12642408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 29185462 - 29185499
Alignment:
Q  67 tgttatgaaattaatctaaaatattgcaagatattgta 104  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  29185462 tgttatgaaattaatccaaaatattgcaatatattgta 29185499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 7578783 - 7578740
Alignment:
Q  67 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 110  Q
    |||||||||||||||||||| ||||| |||||||||||||||||    
T  7578783 tgttatgaaattaatctaaagtattgtaagatattgtacaacat 7578740  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 17190918 - 17190874
Alignment:
Q  66 ttgttatgaaattaatctaaaatattgcaagatattgtacaacat 110  Q
    ||||||||||| |||||||||  ||||||||||||||||||||||    
T  17190918 ttgttatgaaaataatctaaagaattgcaagatattgtacaacat 17190874  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 23453781 - 23453737
Alignment:
Q  66 ttgttatgaaattaatctaaaatattgcaagatattgtacaacat 110  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||||    
T  23453781 ttgttatgaaattaatccaaagtattgtaagatattgtacaacat 23453737  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 19084729 - 19084686
Alignment:
Q  67 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 110  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||    
T  19084729 tgttatgaaattgatcaaaagtattgcaagatattgtacaacat 19084686  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 17830674 - 17830715
Alignment:
Q  69 ttatgaaattaatctaaaatattgcaagatattgtacaacat 110  Q
    |||| ||||||||||||| ||||| |||||||||||||||||    
T  17830674 ttataaaattaatctaaagtattgtaagatattgtacaacat 17830715  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 16443195 - 16443239
Alignment:
Q  66 ttgttatgaaattaatctaaaatattgcaagatattgtacaacat 110  Q
    ||||||| ||||||||| |||  ||||||||||||||||||||||    
T  16443195 ttgttataaaattaatccaaagcattgcaagatattgtacaacat 16443239  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 18557456 - 18557496
Alignment:
Q  67 tgttatgaaattaatctaaaatattgcaagatattgtacaa 107  Q
    |||||||||||||||| ||| ||||| ||||||||||||||    
T  18557456 tgttatgaaattaatcaaaagtattgtaagatattgtacaa 18557496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 8563638 - 8563675
Alignment:
Q  67 tgttatgaaattaatctaaaatattgcaagatattgta 104  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  8563638 tgttatgaaattgatctaaagtattgcaagatattgta 8563675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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