View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15282_high_1_N (Length: 335)

Name: NF15282_high_1_N
Description: NF15282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15282_high_1_N
NF15282_high_1_N
[»] chr8 (15 HSPs)
chr8 (1-200)||(6311097-6311299)
chr8 (197-332)||(38613622-38613757)
chr8 (1-198)||(7290009-7290211)
chr8 (8-197)||(4760177-4760366)
chr8 (1-197)||(36979184-36979379)
chr8 (10-197)||(30655448-30655635)
chr8 (1-197)||(18870657-18870849)
chr8 (1-206)||(10689238-10689442)
chr8 (1-197)||(18853263-18853457)
chr8 (1-161)||(33037901-33038063)
chr8 (56-176)||(39784963-39785086)
chr8 (56-176)||(25328418-25328540)
chr8 (40-176)||(35745213-35745353)
chr8 (102-176)||(10684452-10684528)
chr8 (123-199)||(19752609-19752683)
[»] chr5 (22 HSPs)
chr5 (1-198)||(1457245-1457446)
chr5 (1-197)||(27444771-27444972)
chr5 (1-197)||(43592080-43592281)
chr5 (1-197)||(43598525-43598726)
chr5 (1-197)||(43604017-43604218)
chr5 (1-197)||(43609509-43609710)
chr5 (1-197)||(27449615-27449816)
chr5 (1-180)||(30631227-30631408)
chr5 (30-176)||(28807687-28807837)
chr5 (1-176)||(15044512-15044688)
chr5 (30-176)||(37556737-37556887)
chr5 (30-176)||(37561559-37561709)
chr5 (40-176)||(2785197-2785337)
chr5 (1-78)||(31180138-31180216)
chr5 (11-197)||(38191983-38192164)
chr5 (11-197)||(38219208-38219389)
chr5 (40-176)||(31401973-31402113)
chr5 (132-197)||(31180079-31180142)
chr5 (40-176)||(31397116-31397256)
chr5 (40-158)||(33791158-33791278)
chr5 (40-158)||(33768021-33768141)
chr5 (141-197)||(35387474-35387527)
[»] chr4 (11 HSPs)
chr4 (6-176)||(3813846-3814020)
chr4 (1-198)||(51520257-51520459)
chr4 (1-198)||(56146794-56146996)
chr4 (1-176)||(9224490-9224668)
chr4 (1-176)||(9229277-9229455)
chr4 (30-176)||(18855549-18855697)
chr4 (1-197)||(24741748-24741942)
chr4 (1-197)||(29760449-29760643)
chr4 (56-176)||(45347957-45348079)
chr4 (56-176)||(45357436-45357558)
chr4 (45-176)||(5732486-5732618)
[»] chr7 (18 HSPs)
chr7 (10-176)||(24024420-24024589)
chr7 (1-176)||(12396735-12396913)
chr7 (1-176)||(12406155-12406333)
chr7 (4-176)||(31109670-31109844)
chr7 (30-176)||(19992135-19992283)
chr7 (1-176)||(4866553-4866732)
chr7 (30-176)||(21812353-21812501)
chr7 (1-197)||(20357642-20357837)
chr7 (1-199)||(2057763-2057967)
chr7 (72-197)||(1533608-1533730)
chr7 (11-197)||(21645818-21645997)
chr7 (122-197)||(2479148-2479221)
chr7 (11-40)||(21639770-21639799)
chr7 (122-201)||(47263485-47263562)
chr7 (102-176)||(16879894-16879970)
chr7 (102-176)||(16884750-16884826)
chr7 (102-176)||(24261511-24261587)
chr7 (102-176)||(24266390-24266466)
[»] chr3 (16 HSPs)
chr3 (1-199)||(7167049-7167246)
chr3 (1-176)||(22173278-22173456)
chr3 (1-197)||(2671681-2671876)
chr3 (45-176)||(18656256-18656388)
chr3 (1-197)||(8739158-8739354)
chr3 (1-197)||(9091396-9091592)
chr3 (33-197)||(28503982-28504145)
chr3 (30-176)||(2677202-2677351)
chr3 (94-197)||(40372986-40373085)
chr3 (30-176)||(2673046-2673195)
chr3 (30-176)||(10207755-10207904)
chr3 (66-198)||(8477170-8477301)
chr3 (93-176)||(8512037-8512122)
chr3 (93-176)||(8516917-8517002)
chr3 (40-150)||(24967957-24968069)
chr3 (1-40)||(40372890-40372929)
[»] scaffold0355 (2 HSPs)
scaffold0355 (1-176)||(9725-9902)
scaffold0355 (28-176)||(1-143)
[»] chr6 (15 HSPs)
chr6 (30-176)||(6438324-6438471)
chr6 (1-176)||(22010780-22010958)
chr6 (1-176)||(14742519-14742697)
chr6 (52-176)||(11856795-11856921)
chr6 (1-176)||(14737659-14737838)
chr6 (1-176)||(28184325-28184507)
chr6 (30-176)||(28155684-28155832)
chr6 (52-197)||(30125940-30126084)
chr6 (72-197)||(5674934-5675057)
chr6 (40-176)||(6005239-6005379)
chr6 (40-176)||(16838566-16838706)
chr6 (30-158)||(33330560-33330690)
chr6 (30-176)||(33336057-33336207)
chr6 (40-158)||(5343322-5343443)
chr6 (122-197)||(31936398-31936470)
[»] scaffold0135 (1 HSPs)
scaffold0135 (1-176)||(35145-35323)
[»] chr2 (10 HSPs)
chr2 (1-176)||(44312707-44312885)
chr2 (1-199)||(11099022-11099219)
chr2 (1-197)||(14291295-14291490)
chr2 (4-176)||(32246607-32246786)
chr2 (1-197)||(9296496-9296691)
chr2 (1-176)||(39812071-39812250)
chr2 (40-176)||(19344243-19344382)
chr2 (40-176)||(19349101-19349240)
chr2 (11-197)||(25403443-25403624)
chr2 (11-197)||(25398305-25398486)
[»] chr1 (10 HSPs)
chr1 (30-176)||(39445322-39445470)
chr1 (30-176)||(44023987-44024135)
chr1 (30-176)||(25445204-25445352)
chr1 (30-176)||(1055126-1055274)
chr1 (1-176)||(41398060-41398238)
chr1 (98-176)||(41386571-41386650)
chr1 (1-161)||(24787459-24787624)
chr1 (40-158)||(43988589-43988709)
chr1 (11-197)||(24202875-24203054)
chr1 (141-197)||(19359079-19359132)
[»] scaffold0464 (1 HSPs)
scaffold0464 (30-176)||(185-333)
[»] scaffold0978 (1 HSPs)
scaffold0978 (1-198)||(331-528)
[»] scaffold0127 (1 HSPs)
scaffold0127 (98-176)||(34132-34211)
[»] scaffold0197 (2 HSPs)
scaffold0197 (40-176)||(19288-19428)
scaffold0197 (102-176)||(14497-14573)
[»] scaffold0028 (1 HSPs)
scaffold0028 (40-176)||(149079-149219)
[»] scaffold0259 (1 HSPs)
scaffold0259 (40-176)||(2374-2514)
[»] scaffold0479 (1 HSPs)
scaffold0479 (115-176)||(13171-13233)
[»] scaffold0188 (2 HSPs)
scaffold0188 (72-197)||(24208-24331)
scaffold0188 (11-197)||(18058-18238)
[»] scaffold0087 (1 HSPs)
scaffold0087 (122-197)||(44174-44247)
[»] scaffold0009 (1 HSPs)
scaffold0009 (102-176)||(182152-182228)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 6311299 - 6311097
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgtt 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||| |||||||||||||||||||| |||  ||||    
T  6311299 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgctttgttatctcttagtgtggttttgctatacactagtctagggctgctttgttgtt 6311200  T
Q  98 gtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6311199 gtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggattcacaaca 6311100  T
Q  198 gaa 200  Q
    |||    
T  6311099 gaa 6311097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 197 - 332
Target Start/End: Complemental strand, 38613757 - 38613622
Alignment:
Q  197 agaagcaaaattcagcagattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 296  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613757 agaagcaaaatcgagctgattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 38613658  T
Q  297 aaaattactcataattttgaaacctgggaccagaga 332  Q
    |||||||||||||||||||||| |||||||||||||    
T  38613657 aaaattactcataattttgaaagctgggaccagaga 38613622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 7290009 - 7290211
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttg-cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||||||||  |  ||||||||||||||| || |||| ||||||||||| ||||| |||||||||||||||||||| |||  |||    
T  7290009 ttctcggtgttttgttcttccttttatcacttatcttgtttatggtttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgt 7290108  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaa 195  Q
    |||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||  ||||||| ||||||    
T  7290109 tgtttgtttggagaccatttgttctcattgattaccactatctcttgctccacacatcaatgtttatttcattggtgtgagtttggaaccggattcacaa 7290208  T
Q  196 cag 198  Q
    |||    
T  7290209 cag 7290211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 4760177 - 4760366
Alignment:
Q  8 tgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgt--ttgct 104  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| | |||||||||||||||||| |||||||||  |||||    
T  4760177 tgttttgttcttcctttcttgcttatcttgtttatgctttgttatctctttgtgtggttttgctctacactagtctagggctgtttttgttgttgttgct 4760276  T
Q  105 tggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
    |||||||||||| | ||||||||||||||||||| || |||||||||||| |||||  |||||||| ||||||||||||||||| ||||||||    
T  4760277 tggaaaccattt-tgctcattgattaccactatctctagctccacacatctttgtt--tttcattgatgtgagtttcaaccggattcacaaca 4760366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 36979379 - 36979184
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgt 99  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||||| ||||| | |||||||||||||||||| |||||||||    
T  36979379 ttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttggtatctctttgtgtggttttgctctacactagtctagggctgtttttgttgt 36979281  T
Q  100 --ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
      ||||||||||||||||| |  |||||||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||| ||||||||    
T  36979280 tgttgcttggaaaccattt-tgttcattgattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccggattcacaaca 36979184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 30655635 - 30655448
Alignment:
Q  10 ttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagtctagggctg-gttttgttgt--ttgctt 105  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||| |||||| ||||| | ||||||||||||||||||  |||||||||  ||||||    
T  30655635 ttttgttcttcctttcttgcttatcttgtttatgctttgttatctctatgtgtggttttgctctacactagtctagggctgttttttgttgttgttgctt 30655536  T
Q  106 ggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||||||| ||||||||    
T  30655535 ggaaaccattt-tgttcattgattaccactatctcttgctccacacatctttgt---tttcattggtgtgagtttcaaccggattcacaaca 30655448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 18870657 - 18870849
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgt 99  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||||| ||||| | || || ||||||||||   |||||||||    
T  18870657 ttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttggtatctctttgtgtggttttgctctaaacaagtctagggcgttttttgttgt 18870755  T
Q  100 ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
    |||||||||||||||||   ||||| |||||||| |||| ||||||||||||||| ||||   |||||||||||||||||||||||||| ||||||||    
T  18870756 ttgcttggaaaccattt-aactcatagattaccattatctcttgctccacacatctttgt---tttcattggtgtgagtttcaaccggattcacaaca 18870849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 10689238 - 10689442
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgt 99  Q
    |||| |||||||||||||||||||||| |||||||||||| ||| ||| || ||||||||||| ||||| | |||||||  |||||| || |||||||||    
T  10689238 ttcttggtgttttgttcttcctttcttacttatcttgttt-tgctttggtatctctttgtgtggttttgctctacactacactagggttgtttttgttgt 10689336  T
Q  100 --ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
      |||||||||||||||| |  ||||| ||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||| || |||||||    
T  10689337 tgttgcttggaaaccattag-actcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccgaaaacacaaca 10689433  T
Q  198 gaagcaaaa 206  Q
     || |||||    
T  10689434 caatcaaaa 10689442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 18853263 - 18853457
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagtctagggc---tggttttgt 96  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||||| ||||| | || || ||||||||||   |  ||||||    
T  18853263 ttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttggtatctctttgtgtggttttgctctaaacaagtctagggcgtttttttttgt 18853361  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaac 196  Q
    |||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||    ||| |||| ||||||||||||||||||||| |||||||    
T  18853362 tgtttgcttggaaaccatttg-actcatagattaccactatctcttgctccacacatc----tttgtttcgttggtgtgagtttcaaccggattcacaac 18853456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 33037901 - 33038063
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttg 98  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||||| | || ||||||||||| ||||| | |||||||||||||||||| || ||||||    
T  33037901 ttcttggtgttttgttcttcttttcttgcttatcttgttt-tgctttggtatctctttgtgtggttttgctctacactagtctagggctgtttattgttg 33037999  T
Q  99 tt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgttt 161  Q
    ||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| ||||||    
T  33038000 ttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgttt 33038063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 39784963 - 39785086
Alignment:
Q  56 ttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacat 153  Q
    ||||||| ||||| ||||||||||  |||||||| |||  |||| || ||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  39784963 ttgtgtggttttgctatacactagcttagggctgttttgttgttattggcttggagaccatttgttctcattgattatcactatcacttgctccacacat 39785062  T
Q  154 catt-gtttatttcattggtgtga 176  Q
    | || |||||||||||||||||||    
T  39785063 ctttggtttatttcattggtgtga 39785086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 25328418 - 25328540
Alignment:
Q  56 ttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacat 153  Q
    ||||||| ||||| ||||||||||| ||||| || |||  ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |||||    
T  25328418 ttgtgtggttttgctatacactagt-tagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccgcacat 25328516  T
Q  154 cattg-tttatttcattggtgtga 176  Q
    ||||| |||||||||||| |||||    
T  25328517 cattgatttatttcattgttgtga 25328540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 35745353 - 35745213
Alignment:
Q  40 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 137  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  35745353 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 35745254  T
Q  138 cacttgctccacacatcatt-gtttatt-tcattggtgtga 176  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  35745253 cacttgctccacacatcattggtttattctcattggtgtga 35745213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 10684452 - 10684528
Alignment:
Q  102 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 176  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  10684452 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 10684528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 19752609 - 19752683
Alignment:
Q  123 attgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 199  Q
    |||||||||||||  |  |||||||||||||| |||||| |||||||||||||| |||  |||||| ||||||||||    
T  19752609 attgattaccacttccttttgctccacacatctttgttt-tttcattggtgtga-tttttaccggattcacaacaga 19752683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 1457245 - 1457446
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgtt 97  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| |||  ||||    
T  1457245 ttctcggtgttttgttcttcctttctttcttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgtt 1457344  T
Q  98 gtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaac 196  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  1457345 gtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaac 1457444  T
Q  197 ag 198  Q
    ||    
T  1457445 ag 1457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 27444972 - 27444771
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttg-cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||||||||  |  |||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| | |  |||    
T  27444972 ttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctatgttgt 27444873  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaa 195  Q
    |||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||    
T  27444872 tgtttgcttggagaccatttgtactcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaa 27444773  T
Q  196 ca 197  Q
    ||    
T  27444772 ca 27444771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 43592281 - 43592080
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttg-cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||||||||  |  |||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| |||  |||    
T  43592281 ttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgt 43592182  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaa 195  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||  ||||||| ||||||    
T  43592181 tgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattgatgtgactttggaaccggattcacaa 43592082  T
Q  196 ca 197  Q
    ||    
T  43592081 ca 43592080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 43598726 - 43598525
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttg-cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||||||||  |  |||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| |||  |||    
T  43598726 ttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgt 43598627  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaa 195  Q
    |||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||    
T  43598626 tgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaa 43598527  T
Q  196 ca 197  Q
    ||    
T  43598526 ca 43598525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 43604218 - 43604017
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttg-cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||||||||  |  |||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| |||  |||    
T  43604218 ttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgt 43604119  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaa 195  Q
    |||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||    
T  43604118 tgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaa 43604019  T
Q  196 ca 197  Q
    ||    
T  43604018 ca 43604017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 43609710 - 43609509
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttg-cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||||||||  |  |||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| |||  |||    
T  43609710 ttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgt 43609611  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaa 195  Q
    |||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||    
T  43609610 tgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaa 43609511  T
Q  196 ca 197  Q
    ||    
T  43609510 ca 43609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 27449816 - 27449615
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttg-cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||||||||  |  |||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| | |  |||    
T  27449816 ttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctatgttgt 27449717  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaa 195  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||    
T  27449716 tgtttgcttggagaccatttgtactcattgattaccactatctcttgctccacatatcattgtttatttcattggtgtgagtttggaaccggattcacaa 27449617  T
Q  196 ca 197  Q
    ||    
T  27449616 ca 27449615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 30631408 - 30631227
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgt 99  Q
    |||| |||||||||||||||||||||| |||||||||||||||||| |||| || | | |||| ||||| |||||||||||||||||||| |||||||||    
T  30631408 ttcttggtgttttgttcttcctttcttacttatcttgtttatgctttgttatctatatatgtgattttgctatacactagtctagggctg-ttttgttgt 30631310  T
Q  100 t--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt 180  Q
    |  |||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  30631309 tgttgcttgaaaaccatttgttctcatagattaccactatctcttgctccacacatcattgtttatttcatttgtgtgagttt 30631227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 28807687 - 28807837
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgt--tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattg 126  Q
    ||||||||||||||||||||||||||||| ||| |||| |  ||||||||||  |||||||| || ||||||||||||||||| ||||||||||||||||    
T  28807687 ttatcttgtttatgcttgttagctctttgagtggttttttgctatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattg 28807786  T
Q  127 attaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  28807787 attatcactatcacttgctccacacatcattggtttatttcattggtgtga 28807837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 15044688 - 15044512
Alignment:
Q  1 ttctcggtgttttgttcttccttt-cttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||| |  | ||||| ||||| ||||| |||||||||||||||||||| |||  |||    
T  15044688 ttcttggtgttttgttcttccttttcttgcttatcttgtttatgctttggaatctctt-gtgtggttttgctatacactagtctagggctgttttgttgt 15044590  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 176  Q
    |||| | ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||||||||||||    
T  15044589 tgttggtttggagaccatttgttctcattgattaccactatcacttgctctacacgtcattg--tatttcattggtgtga 15044512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 37556737 - 37556887
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattga 127  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||| ||||   ||||| |||  ||||||| |||||||  ||||||| |||||| ||    
T  37556737 ttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttggaggccatttgctctcataga 37556836  T
Q  128 ttaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 176  Q
    ||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37556837 ttatcactatcacttgctccacacatctttggtttattatcattggtgtga 37556887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 37561559 - 37561709
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattga 127  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||| ||||   ||||| |||  ||||||| |||||||  ||||||| |||||| ||    
T  37561559 ttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttggaggccatttgctctcataga 37561658  T
Q  128 ttaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 176  Q
    ||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37561659 ttatcactatcacttgctccacacatctttggtttattatcattggtgtga 37561709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 2785337 - 2785197
Alignment:
Q  40 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 137  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  2785337 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 2785238  T
Q  138 cacttgctccacacatcatt-gtttatt-tcattggtgtga 176  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  2785237 cacttgctccacacatcattggtttattctcattggtgtga 2785197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 31180216 - 31180138
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacacta 78  Q
    |||| |||||||||||||| ||||||| |||||||||||||||| |||||| ||||||||||| ||||| |||||||||    
T  31180216 ttcttggtgttttgttctttctttctttcttatcttgtttatgctttgttatctctttgtgtggttttgctatacacta 31180138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 38192164 - 38191983
Alignment:
Q  11 tttgttcttcctttcttgcttatcttgtttatgcttgttagctct-ttgtgtgcttttgttatacactagtctagggctggttttgttgtt--tgcttgg 107  Q
    ||||||||||||||||||||||||||||||  ||||  ||  ||| ||||||| | ||| | |||||||||||||||||| ||||||||||  |||||||    
T  38192164 tttgttcttcctttcttgcttatcttgttt--gctttgtat-tctcttgtgtggtgttgctctacactagtctagggctgtttttgttgttgttgcttgg 38192068  T
Q  108 aaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
    | ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||||||||||||||||||||| ||||||||    
T  38192067 agacacttta--cacatagattaccacttccttttgctccacacatctttgttta---cattggtgtgagtttcaaccggattcacaaca 38191983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 38219389 - 38219208
Alignment:
Q  11 tttgttcttcctttcttgcttatcttgtttatgcttgttagctct-ttgtgtgcttttgttatacactagtctagggctggttttgttgtt--tgcttgg 107  Q
    ||||||||||||||||||||||||||||||  ||||  ||  ||| ||||||| | ||| | |||||||||||||||||| ||||||||||  |||||||    
T  38219389 tttgttcttcctttcttgcttatcttgttt--gctttgtat-tctcttgtgtggtgttgctctacactagtctagggctgtttttgttgttgttgcttgg 38219293  T
Q  108 aaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
    | ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||||||||||||||||||||| ||||||||    
T  38219292 agacacttta--cacatagattaccacttccttttgctccacacatctttgttta---cattggtgtgagtttcaaccggattcacaaca 38219208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 31401973 - 31402113
Alignment:
Q  40 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 137  Q
    ||||||||||||||||| ||||| ||||| | |||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  31401973 tatgcttgttagctcttagtgtggttttgctttacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 31402072  T
Q  138 cacttgctccacacatcattg-tttatt-tcattggtgtga 176  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  31402073 cacttgctccacacatcattgatttattctcattggtgtga 31402113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 31180142 - 31180079
Alignment:
Q  132 cactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||    
T  31180142 cactatctcttgctccacacatcattgtta--ttcattggtgtgagtttcaaccggattcacaaca 31180079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 31397116 - 31397256
Alignment:
Q  40 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 137  Q
    ||||||||||||||||| ||||| ||||| | |||| ||| ||  || || |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  31397116 tatgcttgttagctcttagtgtggttttgctttacattaggcttaggatgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 31397215  T
Q  138 cacttgctccacacatcattg-tttatt-tcattggtgtga 176  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  31397216 cacttgctccacacatcattgatttattctcattggtgtga 31397256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 33791278 - 33791158
Alignment:
Q  40 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 137  Q
    |||||||||||||||| | |||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  33791278 tatgcttgttagctctatatgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 33791179  T
Q  138 cacttgctccacacatcattg 158  Q
    |||||||||||||||||||||    
T  33791178 cacttgctccacacatcattg 33791158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 33768141 - 33768021
Alignment:
Q  40 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 137  Q
    |||||||||||||||| | |||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||   ||||||  ||||| ||||| | ||||    
T  33768141 tatgcttgttagctctatatgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggtcatttgcactcatagattatctctat 33768042  T
Q  138 cacttgctccacacatcattg 158  Q
    |||||||||||||||||||||    
T  33768041 cacttgctccacacatcattg 33768021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 35387527 - 35387474
Alignment:
Q  141 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  35387527 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 35387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 3814020 - 3813846
Alignment:
Q  6 ggtgttttgttcttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgctttt-gttatacactagtctagggctggttt--tgttgtttg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |  ||||||||||||||| ||| |||  |||||||||    
T  3814020 ggtgttttgttcttcctttcttgcttatcttgtttatgcttgttagctctttgtgtggtttttgcgatacactagtctaggactgttttgttgttgtttg 3813921  T
Q  103 cttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3813920 cttggagaccatttgctctcattgattaccactatcacttgctccacacatcattggtttatttcattggtgtga 3813846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 51520459 - 51520257
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttg-cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||||||||  |  |||||||||||||||||| |||| |||||||| || ||||| |||||||||||||||||||| |||  |||    
T  51520459 ttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtatggttttgctatacactagtctagggctgctttgttgt 51520360  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaa 195  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||    
T  51520359 tgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaa 51520260  T
Q  196 cag 198  Q
    |||    
T  51520259 cag 51520257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 56146794 - 56146996
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttg-cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||||||||  |  |||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| |||  |||    
T  56146794 ttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgt 56146893  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaa 195  Q
    |||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||    
T  56146894 tgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgaatttggaaccggattcacaa 56146993  T
Q  196 cag 198  Q
    |||    
T  56146994 cag 56146996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 9224490 - 9224668
Alignment:
Q  1 ttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||||||||    ||||||||||||| ||||| | || ||||||||||| ||||| |||||||||||||||||||| |||  |||    
T  9224490 ttctcggtgttttgttcttccttttaccgcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgttttgttgt 9224588  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 176  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9224589 tgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 9224668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 9229277 - 9229455
Alignment:
Q  1 ttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||||||||    ||||||||||||| ||||| | || ||||||||||| ||||| |||||||||||||||||||| |||  |||    
T  9229277 ttctcggtgttttgttcttccttttaccgcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgttttgttgt 9229375  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 176  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9229376 tgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 9229455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 18855697 - 18855549
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 128  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||| || ||||||||||||||||| ||||||||||||||||||    
T  18855697 ttatcttgtttatgcttgttagctctttgtgtggttttgctatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgat 18855598  T
Q  129 taccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    || |||||||||||||||||||||||||| |||||||||||||||||||    
T  18855597 tatcactatcacttgctccacacatcattggtttatttcattggtgtga 18855549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 24741942 - 24741748
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgt 99  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||||| ||||| | |||||||||||||||||| |||||||||    
T  24741942 ttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttggtatctctttgtgtggttttgctctacactagtctagggctgtttttgttgt 24741844  T
Q  100 --ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
      ||||||||||||||||| |  |||||||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||||||| ||||||||    
T  24741843 tgttgcttggaaaccattt-tgttcattgattaccactatctcttgctccacacatctttgt---tttcattggtgtgagtttcaaccggattcacaaca 24741748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 29760643 - 29760449
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgt 99  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| |||||  ||||||||||| ||||| | ||||||||||||||| | ||||||||||    
T  29760643 ttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttgttctctctttgtgtggttttgctctacactagtctaggg-ttgttttgttgt 29760546  T
Q  100 --ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
      ||||||||||||||||| |  | |||||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||| ||||||||    
T  29760545 tgttgcttggaaaccattt-tgtttattgattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccggattcacaaca 29760449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 45347957 - 45348079
Alignment:
Q  56 ttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacat 153  Q
    ||||||| ||||| | |||||||||||||| ||| |||  ||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||    
T  45347957 ttgtgtggttttgctttacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacat 45348056  T
Q  154 cattgtttatttcattggtgtga 176  Q
    |||||||||||||||||||||||    
T  45348057 cattgtttatttcattggtgtga 45348079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 45357436 - 45357558
Alignment:
Q  56 ttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacat 153  Q
    ||||||| ||||| | |||||||||||||| ||| |||  ||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||    
T  45357436 ttgtgtggttttgctttacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacat 45357535  T
Q  154 cattgtttatttcattggtgtga 176  Q
    |||||||||||||||||||||||    
T  45357536 cattgtttatttcattggtgtga 45357558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 5732618 - 5732486
Alignment:
Q  45 ttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcactt 142  Q
    |||||||||||||||||| ||||  ||||||||||  |||||||| |||  ||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  5732618 ttgttagctctttgtgtggttttactatacactagcttagggctgttttgttgttgttagcttggagaccatttgttctcattgattaccaccatcactt 5732519  T
Q  143 gctccacacatcattgtttatttcattggtgtga 176  Q
    ||||||||||||||||| | ||||||||||||||    
T  5732518 gctccacacatcattgtat-tttcattggtgtga 5732486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 24024420 - 24024589
Alignment:
Q  10 ttttgttcttccttt-cttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttg 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||   ||||| |||  |||||||||||||    
T  24024420 ttttgttcttccttttcttgcttatcttgtttatgcttgttagctctttgtgtggttttgctatatactagtcataggctgttttgttgttgtttgcttg 24024519  T
Q  107 gaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 176  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24024520 gagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 24024589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 12396913 - 12396735
Alignment:
Q  1 ttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||||| |||   ||||||||||||| ||||| | || ||||||||||| ||||| |||||||||||||||||||| |||  |||    
T  12396913 ttctcggtgttttgttcttccctttaccgcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgctttgttgt 12396815  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 176  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12396814 tgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 12396735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 12406333 - 12406155
Alignment:
Q  1 ttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||| ||||    ||||||||||||| ||||| | || ||||||||||| ||||| |||||||||||||||||||| |||  |||    
T  12406333 ttctcggtgttttgttctttcttttaccgcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgctttgttgt 12406235  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 176  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12406234 tgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 12406155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 31109670 - 31109844
Alignment:
Q  4 tcggtgttttgttcttccttt-cttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgt 99  Q
    ||||||||||||||||||||| |||| ||||||||||||||||| |  | ||||| ||||| ||||| ||||||||||| |||||||| |||  ||||||    
T  31109670 tcggtgttttgttcttccttttcttgtttatcttgtttatgctttggaatctctt-gtgtggttttgctatacactagt-tagggctgttttgttgttgt 31109767  T
Q  100 ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 176  Q
    | ||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  31109768 tggcttggagaccatttgttctcattgattatcactatcacttgctgcacacatcattgtttatttcattggtgtga 31109844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 19992283 - 19992135
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 128  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||| || |||||||  |||||||| ||||||||||||||||||    
T  19992283 ttatcttgtttatgcttgttagctctttgtgtggttttgctatacactagcttagggctgtttgttgttgtaagcttggaagccatttgttctcattgat 19992184  T
Q  129 taccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    || ||||||||| ||||||||||||| || |||||||||||||||||||    
T  19992183 tatcactatcacctgctccacacatctttggtttatttcattggtgtga 19992135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 4866732 - 4866553
Alignment:
Q  1 ttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagctctttgtgtgctttt-gttatacactagtctagggctggttt--tg 95  Q
    ||||||||||||||||||||||||    ||||||||||||| ||||| | || || |||||||| |||| | |||||||||||||||| ||| |||  ||    
T  4866732 ttctcggtgttttgttcttccttttaccgcttatcttgttt-tgctttggtatctttttgtgtggtttttgctatacactagtctaggactgttttgttg 4866634  T
Q  96 ttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 176  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4866633 ttgtttgcttggagaccatttgtcctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 4866553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 21812353 - 21812501
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 128  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||||||||  |||||||| || |||||||| |||||||| ||||||| |||||| |||    
T  21812353 ttatcttgtttatgcttgttaactctttgtgtggttttgctatacactagcttagggctgtttgttgttgttagcttggaagccatttgctctcatagat 21812452  T
Q  129 taccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    |||||||||| ||||||||||||||| || |||||||||||||||||||    
T  21812453 taccactatctcttgctccacacatctttggtttatttcattggtgtga 21812501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 20357642 - 20357837
Alignment:
Q  1 ttctcggtgttttgttcttccttt-cttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggtt---ttg 95  Q
    |||| ||| ||||||||||||||| ||||||||||||||||  |||| |||| ||||||||||| ||||| | |||||||||||||||||| ||   |||    
T  20357642 ttcttggtattttgttcttccttttcttgcttatcttgttt--gctttgttatctctttgtgtggttttgctctacactagtctagggctgtttttgttg 20357739  T
Q  96 ttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaa 195  Q
    ||||| ||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||||||| ||||||    
T  20357740 ttgttagcttggagaccatttg-gctcatagattaccactatctcttgctccacacatctttgt---tttcattggtgtgagtttcaaccggattcacaa 20357835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 2057967 - 2057763
Alignment:
Q  1 ttctcggtgttttgttcttcctttc-ttgcttatcttgtttat----gctt-gttagctctttgtgtgcttttgttatacactagtctagggctggtttt 94  Q
    |||| |||||||||||||||||||  ||||||||||||||| |    |||| | || ||||||||||| ||||| | || || |||||||||| | ||||    
T  2057967 ttcttggtgttttgttcttccttttattgcttatcttgtttttttttgctttggtatctctttgtgtggttttgctctaaacaagtctagggcggttttt 2057868  T
Q  95 gttgtt---tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatc 191  Q
    ||||||   |||||||||||||||||  ||||| ||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||    
T  2057867 gttgttgtttgcttggaaaccatttga-ctcatagattaccactatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattc 2057771  T
Q  192 acaacaga 199  Q
    ||||||||    
T  2057770 acaacaga 2057763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 1533608 - 1533730
Alignment:
Q  72 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 169  Q
    |||||||| || |||||||||||||||||  |||||||||||  ||| ||||||||||||||||||||   |||||||||||||| ||||   |||||||    
T  1533608 tacactagactggggctggttttgttgttgttgcttggaaac--ttttttctcattgattaccactatattttgctccacacatctttgt---tttcatt 1533702  T
Q  170 ggtgtgagtttcaaccggaatcacaaca 197  Q
    ||||||||||| ||||||| ||||||||    
T  1533703 ggtgtgagttttaaccggattcacaaca 1533730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 21645997 - 21645818
Alignment:
Q  11 tttgttcttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgtt--tgcttgga 108  Q
    |||||||||||||||||||||||||||||| |  ||||   |||||   ||| | ||| | |||||||| ||||||||| ||||||||||  ||||||||    
T  21645997 tttgttcttcctttcttgcttatcttgtttgtt-ttgtattctctt---gtggtgttgctctacactagactagggctgtttttgttgttgttgcttgga 21645902  T
Q  109 aaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
     ||  |||   ||||| ||||||||||  |  |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  21645901 gacacttta--ctcatagattaccactcccttttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 21645818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 2479221 - 2479148
Alignment:
Q  122 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 197  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  2479221 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 2479148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 40
Target Start/End: Complemental strand, 21639799 - 21639770
Alignment:
Q  11 tttgttcttcctttcttgcttatcttgttt 40  Q
    ||||||||||||||||||||||||||||||    
T  21639799 tttgttcttcctttcttgcttatcttgttt 21639770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 47263562 - 47263485
Alignment:
Q  122 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaacagaag 201  Q
    |||||||||||||| ||  ||||||||| |||| ||||||  ||||||||||||| | |||||||||| ||||||||||||    
T  47263562 cattgattaccact-tcctttgctccacgcatctttgttt--ttcattggtgtgattatcaaccggaactcacaacagaag 47263485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 16879970 - 16879894
Alignment:
Q  102 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 176  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  16879970 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 16879894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 16884826 - 16884750
Alignment:
Q  102 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 176  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  16884826 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 16884750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 24261511 - 24261587
Alignment:
Q  102 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 176  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  24261511 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 24261587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 24266390 - 24266466
Alignment:
Q  102 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 176  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  24266390 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 24266466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 7167246 - 7167049
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgt 99  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| | ||||||||||||||||| ||||||||||    
T  7167246 ttcttggtgttttgttcttcctttcttgcttatcttgtttatgctttgttatctctttgtgtggttttgctctacactagtctagggct-gttttgttgt 7167148  T
Q  100 --ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
      ||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||| ||||||||    
T  7167147 tgttgcttggaaaccattt-tgctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccggattcacaaca 7167051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 22173278 - 22173456
Alignment:
Q  1 ttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||||||||    ||||||||| ||| ||||| | || ||||||||||| ||||| |||||||||||||||||||| |||  |||    
T  22173278 ttctcggtgttttgttcttccttttaccgcttatcttattt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgttttgttgt 22173376  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 176  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22173377 tgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 22173456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 2671681 - 2671876
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagtctagggctggtt---ttgt 96  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||  | |||||||| ||||||||| ||   ||||    
T  2671681 ttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttgttatctctttgtgtggtttttctctacactagactagggctgtttttgttgt 2671779  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaac 196  Q
    |||||||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||| ||||   |||||||||||||||||| ||||||| |||||||    
T  2671780 tgtttgcttggagaccatttg-gctcatagattaccactatctcttgctccacacatctttgt---tttcattggtgtgagttttaaccggattcacaac 2671875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 18656388 - 18656256
Alignment:
Q  45 ttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcactt 142  Q
    |||||||||||||||||| ||||  ||||||||||  |||||||| |||  ||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  18656388 ttgttagctctttgtgtggtttttctatacactagcttagggctgttttgttgttgttagcttggagaccatttgttctcattgattaccaccatcactt 18656289  T
Q  143 gctccacacatcattgtttatttcattggtgtga 176  Q
    ||||||||||||||||| | ||||||||||||||    
T  18656288 gctccacacatcattgtat-tttcattggtgtga 18656256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 8739158 - 8739354
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgt-gcttttgttatacactagtctagggctggttttgttg 98  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| ||| || |||||||||| | ||||||| || || |||||||||| | ||||||||    
T  8739158 ttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttggtatctctttgtgtggtttttgttctaaacaagtctagggcggtttttgttg 8739256  T
Q  99 ---tttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaa 195  Q
       |||||||||||||||||||  ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| ||||||| | ||||||    
T  8739257 ttatttgcttggaaaccatttg-actcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccgaattcacaa 8739352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 9091396 - 9091592
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgt-gcttttgttatacactagtctagggctggttttgttg 98  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| ||| || |||||||||| | ||||||| || || |||||||||| | ||||||||    
T  9091396 ttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttggtatctctttgtgtggtttttgttctaaacaagtctagggcggtttttgttg 9091494  T
Q  99 ---tttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaa 195  Q
       |||||||||||||||||||  ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| ||||||| | ||||||    
T  9091495 ttatttgcttggaaaccatttg-actcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccgaattcacaa 9091590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 28503982 - 28504145
Alignment:
Q  33 tcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgt--ttgcttggaaaccatttgttctcattgatt 129  Q
    |||||||||||||| |||| ||||||||||| ||||| |||||||||||| |||||| ||||||||||  ||||||||||||||||| ||||||| ||||    
T  28503982 tcttgtttatgctttgttatctctttgtgtggttttgctatacactagtcaagggct-gttttgttgttgttgcttggaaaccattt-ttctcatagatt 28504079  T
Q  130 accactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
    | ||||| |  ||||||||||||||||||||   ||||||||||||||||   |||||| ||||||||    
T  28504080 atcactaccttttgctccacacatcattgtt--attcattggtgtgagttaagaccggattcacaaca 28504145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 2677202 - 2677351
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattga 127  Q
    |||||||||| |||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  ||||||| |||||| ||    
T  2677202 ttatcttgtt-atgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgctctcataga 2677300  T
Q  128 ttaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 176  Q
    ||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2677301 ttatctctatcacttgctccacacatcattggtttattctcattggtgtga 2677351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 40372986 - 40373085
Alignment:
Q  94 tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcac 193  Q
    ||||||||||||||||||||||| | | ||||||||||||||||| ||||||||||||| | ||||   |||||||||||||||||| ||||||| ||||    
T  40372986 tgttgtttgcttggaaaccattt-tgcccattgattaccactatctcttgctccacacacctttgt---tttcattggtgtgagttttaaccggattcac 40373081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 2673046 - 2673195
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattga 127  Q
    |||||||||| |||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  ||||||  |||||| ||    
T  2673046 ttatcttgtt-atgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttactctcataga 2673144  T
Q  128 ttaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 176  Q
    ||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2673145 ttatctctatcacttgctccacacatcattggtttattctcattggtgtga 2673195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 10207904 - 10207755
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattga 127  Q
    |||||||||| |||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||    
T  10207904 ttatcttgtt-atgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcataga 10207806  T
Q  128 ttaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 176  Q
    ||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  10207805 ttatctctatcacttgctccacacatcattggtttattctcattggtgtga 10207755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 198
Target Start/End: Complemental strand, 8477301 - 8477170
Alignment:
Q  66 ttgttatacactagtctagggctggttttgttgt--ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttat 163  Q
    ||||| ||||||||||||||||||||||||||||  |||||||| || | ||| | ||| |||||||||||||||  |||||||||||||| ||||   |    
T  8477301 ttgttctacactagtctagggctggttttgttgttgttgcttgggaaac-tttttactctttgattaccactatcttttgctccacacatctttgt---t 8477206  T
Q  164 ttcattggtgtgagtttca-accggaatcacaacag 198  Q
    ||||||||||||||||| | |||||| |||||||||    
T  8477205 ttcattggtgtgagttttataccggattcacaacag 8477170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 8512122 - 8512037
Alignment:
Q  93 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 176  Q
    |||||||| |||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8512122 ttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8512037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 8517002 - 8516917
Alignment:
Q  93 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 176  Q
    |||||||| |||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8517002 ttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8516917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 24968069 - 24967957
Alignment:
Q  40 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 137  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  24968069 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 24967970  T
Q  138 cacttgctccaca 150  Q
    |||||||||||||    
T  24967969 cacttgctccaca 24967957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40372890 - 40372929
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgttt 40  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  40372890 ttcttggtgttttgttcttcctatcttgcttatcttgttt 40372929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 9725 - 9902
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt--ttgttg 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| |||||  |||||||| ||  ||||||    
T  9725 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgcttgttagctc-ttgtgtggttttgctatatactagcttagggctgttttgttgttg 9823  T
Q  99 tttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    |||| ||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  9824 tttggttggagaccatttgctctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 9902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 1 - 143
Alignment:
Q  28 gcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt--ttgttgtttgcttggaaaccatttgttctcatt 125  Q
    |||||||||||||||||||||||||||   ||||| ||||| ||||||||||  |||||||| ||  ||||||||| |||||| |||||||| |||||||    
T  1 gcttatcttgtttatgcttgttagctc---gtgtggttttgctatacactagcttagggctgttttgttgttgtttacttggagaccatttgctctcatt 97  T
Q  126 gattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    |||      ||||||||||||||||||||||| |||||||| ||||||||||    
T  98 gat------tatcacttgctccacacatcattggtttatttaattggtgtga 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 6438471 - 6438324
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 128  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||| || ||||||||||||||||| ||||| ||||||||||||    
T  6438471 ttatcttgtttatgcttgttagctctttgtgtggttttgctatacactagcttagggctgtttgttgttgtttgcttggaagccattggttctcattgat 6438372  T
Q  129 taccactatcacttgctccacacatcattgtttatttcattggtgtga 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6438371 taccactatcacttgctccacacatcattgtttatttcattggtgtga 6438324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 22010780 - 22010958
Alignment:
Q  1 ttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||||||||  | ||||||||||||| ||||| | || ||||||||||| ||||| |||||||| ||||||||| | |||  |||    
T  22010780 ttctcggtgttttgttcttccttttatcgcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacacttgtctagggcggctttgttgt 22010878  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 176  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22010879 tgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 22010958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 14742519 - 14742697
Alignment:
Q  1 ttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||| ||||    ||||||||||||| ||||| | || ||||||||||| ||||| |||||||||||||||||||| |||  |||    
T  14742519 ttctcggtgttttgttctttcttttaccgcttatcttgttt-tgctttgatatctctttgtgtggttttgctatacactagtctagggctgttttgttgt 14742617  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 176  Q
    ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14742618 tgtatgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtttatttcattggtgtga 14742697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 11856921 - 11856795
Alignment:
Q  52 ctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccac 149  Q
    ||||||||||| ||||| |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  11856921 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 11856822  T
Q  150 acatcattgtttatttcattggtgtga 176  Q
    |||||||||||||||||||||||||||    
T  11856821 acatcattgtttatttcattggtgtga 11856795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 14737659 - 14737838
Alignment:
Q  1 ttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagctcttt-gtgtgcttttgttatacactagtctagggctggttt--tg 95  Q
    ||||||||||||||||||| ||||    ||||||||||||| ||||| | || |||||| ||||| ||||| |||||||||||||||||||| |||  ||    
T  14737659 ttctcggtgttttgttctttcttttaccgcttatcttgttt-tgctttggtatctcttttgtgtggttttgctatacactagtctagggctgttttgttg 14737757  T
Q  96 ttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 176  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14737758 ttgtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtttatttcattggtgtga 14737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 28184507 - 28184325
Alignment:
Q  1 ttctcggtgttttgttcttcctttctt--gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tg 95  Q
    ||||||||||||||||||| |||| |   ||||||||||||||||||| |  | ||||| ||||| ||||| |||||||||||||||||||| |||  ||    
T  28184507 ttctcggtgttttgttctttctttttaccgcttatcttgtttatgctttggaatctctt-gtgtggttttgctatacactagtctagggctgttttgttg 28184409  T
Q  96 ttgtttgcttggaaaccattt--gttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    ||||||||||||| |||||||  |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  28184408 ttgtttgcttggagaccatttttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 28184325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 28155684 - 28155832
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattga 127  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||| ||||   ||||| |||  ||||||| ||||| | |||||||| |||||||||    
T  28155684 ttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttgaagaccatttgctctcattga 28155783  T
Q  128 ttaccactatcacttgctccacacatcattgtttatttcattggtgtga 176  Q
    ||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  28155784 ttatcactatcacttgctccacacatcattgtttattgcattggtgtga 28155832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 52 - 197
Target Start/End: Original strand, 30125940 - 30126084
Alignment:
Q  52 ctctttgtgtgcttttgttatacactagtctagggctggttttgtt---gtttgcttggaaaccatttgttctcattgattaccactatcacttgctcca 148  Q
    ||||||||||| ||||| | |||||||||||||||||| |||||||   ||| ||||||| ||||||||  ||||| ||||| ||||| | |||||||||    
T  30125940 ctctttgtgtggttttgctctacactagtctagggctgtttttgttgtagttagcttggagaccatttg-gctcatagattatcactacctcttgctcca 30126038  T
Q  149 cacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
    |||||| ||||   |||||||||||||| ||||||||||| ||||||||    
T  30126039 cacatctttgt---tttcattggtgtgattttcaaccggattcacaaca 30126084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 5674934 - 5675057
Alignment:
Q  72 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 169  Q
    |||||||| ||||||||||||||||||||  ||||||| || | ||| | ||| |||||||||||||||  |||||||||||||| ||||||   |||||    
T  5674934 tacactagactagggctggttttgttgttgttgcttgggaaactttt-tactctttgattaccactatcttttgctccacacatctttgttt---tcatt 5675029  T
Q  170 ggtgtgagtttcaaccggaatcacaaca 197  Q
    ||||||||||| ||||||| ||||||||    
T  5675030 ggtgtgagttttaaccggattcacaaca 5675057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 6005379 - 6005239
Alignment:
Q  40 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 137  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  6005379 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 6005280  T
Q  138 cacttgctccacacatcatt-gtttatt-tcattggtgtga 176  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  6005279 cacttgctccacacatcattggtttattctcattggtgtga 6005239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 16838706 - 16838566
Alignment:
Q  40 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 137  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| ||||| |  |||||||  ||||| ||||| | ||||    
T  16838706 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttgaaggccatttgcactcatagattatctctat 16838607  T
Q  138 cacttgctccacacatcatt-gtttatt-tcattggtgtga 176  Q
    ||||||||||||| |||||| ||||||| ||||||||||||    
T  16838606 cacttgctccacatatcattggtttattctcattggtgtga 16838566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 33330560 - 33330690
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgctttt-gttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattg 126  Q
    |||||||||| |||||||||||||||| ||||| |||| | |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| |    
T  33330560 ttatcttgtt-atgcttgttagctcttagtgtggtttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatag 33330658  T
Q  127 attaccactatcacttgctccacacatcattg 158  Q
    |||| | |||||||||||||||||||||||||    
T  33330659 attatctctatcacttgctccacacatcattg 33330690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 33336057 - 33336207
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgt-tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattg 126  Q
    |||||||||| |||||||||||||||| ||||| ||||   |||||| ||| ||  ||||| |||  ||||||| | |||||  |||||||  ||||| |    
T  33336057 ttatcttgtt-atgcttgttagctcttagtgtggtttttactatacattaggcttaggctgttttgttgttgttagtttggaggccatttgcactcatag 33336155  T
Q  127 attaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 176  Q
    |||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  33336156 attatctctatcacttgctccacacatcattggtttattctcattggtgtga 33336207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 5343443 - 5343322
Alignment:
Q  40 tatgcttgttagctctttgtgtgctttt-gttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccacta 136  Q
    ||||||||||||||||| ||||| |||| | |||||  ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | |||    
T  5343443 tatgcttgttagctcttagtgtggtttttgctatactttaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctcta 5343344  T
Q  137 tcacttgctccacacatcattg 158  Q
    ||||||||||||||||||||||    
T  5343343 tcacttgctccacacatcattg 5343322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 31936470 - 31936398
Alignment:
Q  122 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
    ||||||||||||||  |  |||||||||||||| |||||  |||||||||||||| ||| ||||||| ||||||||    
T  31936470 cattgattaccacttccttttgctccacacatctttgtt--tttcattggtgtga-ttttaaccggattcacaaca 31936398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 35145 - 35323
Alignment:
Q  1 ttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||||||||    ||||||||||||| ||||| | || ||||||||||| ||||| |||||||||||||||||||| |||  |||    
T  35145 ttctcggtgttttgttcttccttttaccgcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgttttgttgt 35243  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 176  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35244 tgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 35323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 44312707 - 44312885
Alignment:
Q  1 ttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||||||||  | ||||||||||||| ||||| | || ||||||||||| ||||| |||||||| ||||||||| | |||  |||    
T  44312707 ttctcggtgttttgttcttccttttatcgcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacacttgtctagggcggctttgttgt 44312805  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 176  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312806 tgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 44312885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 11099022 - 11099219
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgt 99  Q
    |||| |||||||||||||||||||||| |||||||||||| ||||| | || ||||||||||| ||||| | |||||||||||||||||| |||||||||    
T  11099022 ttcttggtgttttgttcttcctttcttccttatcttgttt-tgctttggtatctctttgtgtggttttgctctacactagtctagggctgtttttgttgt 11099120  T
Q  100 --ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
      ||||||||||||||||| |  |||||||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||| ||||||||    
T  11099121 tgttgcttggaaaccattt-tgttcattgattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccggattcacaaca 11099217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 14291490 - 14291295
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagtctagggctggtt---ttgt 96  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||| | |||| ||||||||||||| ||   ||||    
T  14291490 ttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttgttatctctttgtgtggttttgctctacattagtctagggctgtttttgttgt 14291392  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaac 196  Q
    |||||||||||||||||||| | | ||||||||||||||||| ||||||||||||| | ||||   |||||||||||||||||| ||||||| |||||||    
T  14291391 tgtttgcttggaaaccattt-tgcccattgattaccactatctcttgctccacacacctttgt---tttcattggtgtgagttttaaccggattcacaac 14291296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 32246786 - 32246607
Alignment:
Q  4 tcggtgttttgttcttccttt----cttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    |||||||||||||||||||||    |||||||||||||||||||||| |  | ||||| ||||| ||||| |||||||||||||||| ||| |||  |||    
T  32246786 tcggtgttttgttcttcctttttttcttgcttatcttgtttatgctttggaatctctt-gtgtggttttgctatacactagtctaggactgttttgttgt 32246688  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32246687 tgttagcttggagaccatttgttctcatagattaccactatcacttgctccacacatcattggtttatttcattggtgtga 32246607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 9296496 - 9296691
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagtctagggctggtt---ttgt 96  Q
    |||| |||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||| ||||| | |||||||| ||||||||| ||   ||||    
T  9296496 ttcttggtgttttgttcttcctttcttgcttttcttgttt-tgctttgttatctctttgtgtggttttgctctacactagactagggctgtttttgttgt 9296594  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaac 196  Q
    |||||||||||||||||||| | ||||| ||||||||||| |  |||||||||||||| ||||   |||||||||||||||||| ||||||| |||||||    
T  9296595 tgtttgcttggaaaccattt-tgctcatagattaccactaccttttgctccacacatctttgt---tttcattggtgtgagttttaaccggattcacaac 9296690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 39812071 - 39812250
Alignment:
Q  1 ttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgt 96  Q
    ||||||||||||||||||| ||||    ||||||||||||| ||||| |  | ||||| ||||| ||||| ||||||||||  |||||||| |||  |||    
T  39812071 ttctcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgt 39812169  T
Q  97 tgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    |||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  39812170 tgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatttcattggtgtga 39812250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 19344382 - 19344243
Alignment:
Q  40 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 137  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  ||||||| |||||| ||||||||||||    
T  19344382 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgctctcatagattaccactat 19344283  T
Q  138 cacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    | ||||||||||||||| || |||||||||||||||||||    
T  19344282 ctcttgctccacacatctttggtttatttcattggtgtga 19344243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 19349240 - 19349101
Alignment:
Q  40 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 137  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  ||||||| |||||| ||||||||||||    
T  19349240 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgctctcatagattaccactat 19349141  T
Q  138 cacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    | ||||||||||||||| || |||||||||||||||||||    
T  19349140 ctcttgctccacacatctttggtttatttcattggtgtga 19349101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 25403624 - 25403443
Alignment:
Q  11 tttgttcttcctttcttgcttatcttgtttatgcttgttagctct-ttgtgtgcttttgttatacactagtctagggctggttttgttgtt--tgcttgg 107  Q
    ||||||||||||||||||||||||||||||  ||||  ||  ||| ||||||| | ||| | |||||||||||||||||| ||||||||||  |||||||    
T  25403624 tttgttcttcctttcttgcttatcttgttt--gctttgtat-tctcttgtgtggtgttgctctacactagtctagggctgtttttgttgttgttgcttgg 25403528  T
Q  108 aaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
    | ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||||||||||||||||||||| ||||||||    
T  25403527 agacacttta--cacatagattaccacttccttttgctccacacatctttgttta---cattggtgtgagtttcaaccggattcacaaca 25403443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 25398486 - 25398305
Alignment:
Q  11 tttgttcttcctttcttgcttatcttgtttatgcttgttagctct-ttgtgtgcttttgttatacactagtctagggctggttttgttgtt--tgcttgg 107  Q
    ||||||||||||||||||||||||||||||  ||||  ||  ||| ||||||| | ||| | |||||||||||||||||| ||||||||||  |||||||    
T  25398486 tttgttcttcctttcttgcttatcttgttt--gctttgtat-tctcttgtgtggtgttgctctacactagtctagggctgtttttgttgttgttgcttgg 25398390  T
Q  108 aaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
    | ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   |||||||||||||||||||| || ||||||||    
T  25398389 agacacttta--cacatagattaccacttccttttgctccacacatctttgttta---cattggtgtgagtttcaaccagattcacaaca 25398305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 39445470 - 39445322
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 128  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||| || ||||||||||||||||| |||||||||| |||||||    
T  39445470 ttatcttgtttatgcttgttagctctttgtgtggttttgctatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttcacattgat 39445371  T
Q  129 taccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    || |||||||||||||||||||||||||| |||||||||||||||||||    
T  39445370 tatcactatcacttgctccacacatcattggtttatttcattggtgtga 39445322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 44023987 - 44024135
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 128  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||| || ||||||||||||||||| ||||||||||||||||||    
T  44023987 ttatcttgtttatgcttgttagctctttgtgtggttttgctatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgat 44024086  T
Q  129 taccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    || |||||||| ||||||||||||||||| |||||||||||||||||||    
T  44024087 tatcactatcagttgctccacacatcattggtttatttcattggtgtga 44024135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 25445204 - 25445352
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 128  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||||||  |||||||| || ||||||||||||||||| ||||||||||||||||||    
T  25445204 ttatcttgtttacgcttgttagctctttgtgtggttttgctatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgat 25445303  T
Q  129 taccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    || ||||||| |||||||||||||||||| |||||||||||||||||||    
T  25445304 tatcactatcgcttgctccacacatcattggtttatttcattggtgtga 25445352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 1055126 - 1055274
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 128  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||| || |||||||  ||||||||  ||||||||| |||||||    
T  1055126 ttatcttgtttatgcttgttagctctttgtgtggttttgctatacactagcttagggctgtttgttgttgtaagcttggaagacatttgttcacattgat 1055225  T
Q  129 taccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    || |||||||||||||||||||||||||| |||||||||||||||||||    
T  1055226 tatcactatcacttgctccacacatcattggtttatttcattggtgtga 1055274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 41398238 - 41398060
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgt--tatacactagtctagggctggttt---- 93  Q
    |||||||||||||||||||||||     |||||||||||||||||| | || ||||||||||| |||| |  ||||||||||| |||||||| |||        
T  41398238 ttctcggtgttttgttcttcctt-----cttatcttgtttatgctttggtatctctttgtgtggttttttgctatacactagt-tagggctgttttgttg 41398145  T
Q  94 -tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
     ||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  41398144 ttgttgtttgcttggagaccatatgttctcattgattatcactatcacttgctccacacataattggtttatttcattggtgtga 41398060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 41386650 - 41386571
Alignment:
Q  98 gtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  41386650 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 41386571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 24787459 - 24787624
Alignment:
Q  1 ttctcggtgttttgttcttccttt-cttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggtttt---- 94  Q
    |||| ||||||||||||||||||| ||||||||||||||||  |||| |||| ||||||||||| ||||| | ||||  |||||||||||| ||||        
T  24787459 ttcttggtgttttgttcttccttttcttgcttatcttgttt--gctttgttatctctttgtgtggttttgctctacataagtctagggctgttttttgtt 24787556  T
Q  95 gttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgttt 161  Q
    ||||||  |||||||||||||||| | |||||| |||||||||||| ||||||||||||||| ||||||    
T  24787557 gttgttgttgcttggaaaccattt-tgctcatttattaccactatctcttgctccacacatctttgttt 24787624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 43988589 - 43988709
Alignment:
Q  40 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 137  Q
    ||||||||||||||||| ||||| || || |||||| ||| ||  ||||| |||  ||||||| |||||||| ||||||| |||||| ||||| | ||||    
T  43988589 tatgcttgttagctcttagtgtggttgtgctatacattaggcttaggctgttttgttgttgttagcttggaagccatttgctctcatagattatctctat 43988688  T
Q  138 cacttgctccacacatcattg 158  Q
    |||||||||||||||||||||    
T  43988689 cacttgctccacacatcattg 43988709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 24202875 - 24203054
Alignment:
Q  11 tttgttcttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttgga 108  Q
    ||||||||||||||||||||||||||||||  ||||  ||  ||| | |||| | ||| | ||||||||| |||||||| |||  |||||||||||||||    
T  24202875 tttgttcttcctttcttgcttatcttgttt--gctttgtat-tctct-tgtggtgttgctctacactagtttagggctgttttgttgttgtttgcttgga 24202970  T
Q  109 aaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
     ||  |||   | ||| ||||||||||  |  |||||||||||||| ||||||   |||||||||||||||| ||||||| ||||||||    
T  24202971 gacacttta--cacatagattaccactcccttttgctccacacatctttgttt---tcattggtgtgagttttaaccggattcacaaca 24203054  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 19359079 - 19359132
Alignment:
Q  141 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  19359079 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 19359132  T

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Target: scaffold0464 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 333 - 185
Alignment:
Q  30 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 128  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||| || ||||||||||||||||| ||||||||||||||||||    
T  333 ttatcttgtttatgcttgttagctctttgtgtggttttgctatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgat 234  T
Q  129 taccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    || ||| ||||||||||||||||||| || |||||||||||||||||||    
T  233 tatcaccatcacttgctccacacatctttggtttatttcattggtgtga 185  T

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Target: scaffold0978 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 331 - 528
Alignment:
Q  1 ttctcggtgttttgttcttcctttcttgcttatcttgtttatgcttg-ttagctctttgtgtgcttttgttatacactagtctagggctggtttt-gttg 98  Q
    |||| |||||||||||||| |||||| ||||||||||||| |||||  ||| ||||||||||| ||||| |   ||||||| |||||||| |||| ||||    
T  331 ttcttggtgttttgttctttctttctagcttatcttgttt-tgctttattatctctttgtgtggttttgctcctcactagtttagggctgttttttgttg 429  T
Q  99 tt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaac 196  Q
    ||  |||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| ||||   |||||||||||||||||| ||  ||| |||||||    
T  430 ttgttgcttggaaaccatttttgctcatagattaccactatctcttgctccacacatctttgt---tttcattggtgtgagttttaaatggattcacaac 526  T

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Target: scaffold0127 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 34132 - 34211
Alignment:
Q  98 gtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  34132 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 34211  T

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Target: scaffold0197 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 19288 - 19428
Alignment:
Q  40 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 137  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  19288 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 19387  T
Q  138 cacttgctccacacatcattg-tttatt-tcattggtgtga 176  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  19388 cacttgctccacacatcattgatttattctcattggtgtga 19428  T

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Target: scaffold0197; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 14497 - 14573
Alignment:
Q  102 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 176  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  14497 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 14573  T

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Target: scaffold0028 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 149079 - 149219
Alignment:
Q  40 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 137  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  149079 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 149178  T
Q  138 cacttgctccacacatcattg-tttatt-tcattggtgtga 176  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  149179 cacttgctccacacatcattgatttattctcattggtgtga 149219  T

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Target: scaffold0259 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 2374 - 2514
Alignment:
Q  40 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 137  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| |  |||    
T  2374 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatggattatctttat 2473  T
Q  138 cacttgctccacacatcattg-tttatt-tcattggtgtga 176  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  2474 cacttgctccacacatcattgatttattctcattggtgtga 2514  T

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Target: scaffold0479 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 13233 - 13171
Alignment:
Q  115 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 176  Q
    |||||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||    
T  13233 ttgttctcattgattatcactatcacttgctccacatatctttggtttatttcattggtgtga 13171  T

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Target: scaffold0188 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 24208 - 24331
Alignment:
Q  72 tacactagtctagggctggtttt-gttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 168  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   |||    
T  24208 tacactagtctagggctggtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---cat 24302  T
Q  169 tggtgtgagtttcaaccggaatcacaaca 197  Q
    |||||||||||| ||||||| ||||||||    
T  24303 tggtgtgagttttaaccggattcacaaca 24331  T

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Target: scaffold0188; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 18058 - 18238
Alignment:
Q  11 tttgttcttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctgg-ttttgttgt--ttgcttgg 107  Q
    |||||||||||||||||||||||||||||  |||||  ||  ||| | |||| | ||| | ||||||||||||||||||| |||||||||  ||||||||    
T  18058 tttgttcttcctttcttgcttatcttgtt--tgctttgta-ttctct-tgtggtgttgctctacactagtctagggctggtttttgttgttgttgcttgg 18153  T
Q  108 aaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 197  Q
    | ||  ||  | | ||| ||||||||||  |  |||||||||||||| |||||||   ||||||| ||||||| ||||||| ||||||||    
T  18154 agacactt--tacacatagattaccacttccttttgctccacacatctttgttta---cattggtttgagttttaaccggattcacaaca 18238  T

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Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 44174 - 44247
Alignment:
Q  122 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 197  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  44174 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 44247  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 182152 - 182228
Alignment:
Q  102 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 176  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  182152 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 182228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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