View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15283_high_1 (Length: 644)

Name: NF15283_high_1
Description: NF15283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15283_high_1
NF15283_high_1
[»] chr3 (5 HSPs)
chr3 (12-541)||(32103163-32103702)
chr3 (275-541)||(32109007-32109273)
chr3 (198-536)||(32117290-32117637)
chr3 (114-142)||(52769944-52769972)
chr3 (114-142)||(54990789-54990817)
[»] chr2 (3 HSPs)
chr2 (149-226)||(35993340-35993417)
chr2 (114-142)||(38854423-38854451)
chr2 (157-189)||(43065447-43065479)
[»] chr6 (4 HSPs)
chr6 (141-232)||(34939769-34939860)
chr6 (114-143)||(18263926-18263955)
chr6 (114-143)||(18562599-18562628)
chr6 (149-189)||(9027611-9027651)
[»] chr1 (6 HSPs)
chr1 (149-246)||(28689392-28689489)
chr1 (114-143)||(36124919-36124948)
chr1 (115-143)||(3799992-3800020)
chr1 (114-142)||(12587356-12587384)
chr1 (157-189)||(15687083-15687115)
chr1 (115-143)||(50901667-50901695)
[»] chr4 (8 HSPs)
chr4 (174-246)||(25896842-25896914)
chr4 (149-189)||(30024739-30024779)
chr4 (114-143)||(12793872-12793901)
chr4 (149-189)||(4691881-4691921)
chr4 (114-142)||(7949415-7949443)
chr4 (115-143)||(35818175-35818203)
chr4 (114-142)||(37720175-37720203)
chr4 (114-142)||(47386752-47386780)
[»] scaffold0258 (1 HSPs)
scaffold0258 (114-143)||(15284-15313)
[»] chr8 (5 HSPs)
chr8 (114-143)||(8485085-8485114)
chr8 (115-143)||(968448-968476)
chr8 (114-142)||(7347924-7347952)
chr8 (152-232)||(11569411-11569491)
chr8 (141-189)||(25869263-25869311)
[»] chr7 (5 HSPs)
chr7 (114-143)||(30579421-30579450)
chr7 (114-143)||(41487445-41487474)
chr7 (115-143)||(22932674-22932702)
chr7 (114-142)||(41519226-41519254)
chr7 (115-143)||(48772024-48772052)
[»] chr5 (4 HSPs)
chr5 (114-143)||(15486291-15486320)
chr5 (114-143)||(16773893-16773922)
chr5 (115-143)||(4793042-4793070)
chr5 (114-142)||(17028225-17028253)


Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 12 - 541
Target Start/End: Complemental strand, 32103702 - 32103163
Alignment:
Q  12 agataattctttaacacgatgaaataaagataatattttctcatataagctataaagctgttttcaaagttatacttgagattttatgannnnnnnnnnn 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||               
T  32103702 agataattctttaacacgatgaaataaagataatattttctcatataagctataaagctgttttcaaagttatccttgagattttatgattttttttttt 32103603  T
Q  112 nn---------gaagaagctaaattagccc--acctaaattggagattttatgaatataagctgaaaacaatatatggacatgtcataaactttttctaa 200  Q
               |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32103602 ttttttgttttgaagaagctaaattagcccccacctaaattggagattttatgaatataagctgaaaacaatatatggacatgtcataaactttttctaa 32103503  T
Q  201 aagatcgcctaaacagtatcacaagtgtttatactggtagataaacataaatgagtctatccagacaaacctatatcatgaactttattgtatgcaggcg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32103502 aagatcgcctaaacagtatcacaagtgtttatactggtagataaacataa-tgagtctatccagacaaacctatatcacgaactttattgtatgcaggcg 32103404  T
Q  301 ttcaaaatagctgtggccgattctgatacagttttgagccctctaatgcgtgaaatcaaggaagttgatcctgatgggaaagcggtgcccaaggtggtac 400  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  32103403 ttcaagatagctgtggccaattctgatacggttttgagccctctaatgcgtgaaatcaaggaagttggtcctgatgggaaagcggtgaccaaggtggtac 32103304  T
Q  401 ctgctgtgtctgaagaagtgaagaattctctactgatgaacattagaagacgaatgacccctcagccattcaaaatcagggcggacattgaaatgaaatg 500  Q
    || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32103303 cttctgtgtctgaagaaatgaagaattctctactgatgaacattagaagacgaatgacccctcagccattcaaaatcagggcggacattgaaatgaaatg 32103204  T
Q  501 ttttcaatttgatggaattatacacattaaggtcttaatca 541  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32103203 ttttcaatttgatggaattatacacattaaggtcttaatca 32103163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 275 - 541
Target Start/End: Complemental strand, 32109273 - 32109007
Alignment:
Q  275 atcatgaactttattgtatgcaggcgttcaaaatagctgtggccgattctgatacagttttgagccctctaatgcgtgaaatcaaggaagttgatcctga 374  Q
    ||||||||||||||||||||||||| |||||||| | |||||| ||| ||||||  ||||||||| |||| | |||||| ||||||||||||| ||||||    
T  32109273 atcatgaactttattgtatgcaggcattcaaaattgttgtggcagatcctgataaggttttgagcactctcacgcgtgagatcaaggaagttggtcctga 32109174  T
Q  375 tgggaaagcggtgcccaaggtggtacctgctgtgtctgaagaagtgaagaattctctactgatgaacattagaagacgaatgacccctcagccattcaaa 474  Q
    |||| |||  ||| ||||||||||||||||||| ||||||||| ||||| |||||||  |||  || ||||||||||||||||| ||||||||| | |||    
T  32109173 tgggcaagaagtgaccaaggtggtacctgctgtatctgaagaactgaaggattctctggtgaataatattagaagacgaatgactcctcagccaatgaaa 32109074  T
Q  475 atcagggcggacattgaaatgaaatgttttcaatttgatggaattatacacattaaggtcttaatca 541  Q
    || ||||| || |||||||||||||||||||||||||||||| || | |||||||||||||||||||    
T  32109073 attagggctgatattgaaatgaaatgttttcaatttgatggagttctccacattaaggtcttaatca 32109007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 198 - 536
Target Start/End: Complemental strand, 32117637 - 32117290
Alignment:
Q  198 taaaagatcgcctaaacagtatcacaagtgtttatactggtagataaac----at---aaatgagtctatccagacaaacctat--atcatgaactttat 288  Q
    ||||||||| ||| ||||| ||||| |||||||||||||||||||||||    ||   ||||||||| ||||| ||| |||  |  |||||  |||||||    
T  32117637 taaaagatctcctgaacaggatcactagtgtttatactggtagataaactcaaatgtcaaatgagtcaatccaaacagacccctgcatcatagactttat 32117538  T
Q  289 tgtatgcaggcgttcaaaatagctgtggccgattctgatacagttttgagccctctaatgcgtgaaatcaaggaagttgatcctgatgggaaagcggtgc 388  Q
    ||| | ||||||||||||| || | |||| ||| ||||| | ||||||||| | || | |||||||||||||||||||| |||||||||| |||  |||     
T  32117537 tgtgtacaggcgttcaaaagagttttggctgatcctgatgcggttttgagcgcactcacgcgtgaaatcaaggaagttggtcctgatgggcaagaagtga 32117438  T
Q  389 ccaaggtggtacctgctgtgtctgaagaagtgaagaattctctactgatgaacattagaagacgaatgacccctcagccattcaaaatcagggcggacat 488  Q
    | ||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||||||| || |||||||| ||| ||||||| || ||    
T  32117437 ctaaggtggtacctgctgtatctgaagaagtgaaggaatctctactgatgaatattagaagacgaatgactccccagccattgaaactcagggcagatat 32117338  T
Q  489 tgaaatgaaatgttttcaatttgatggaattatacacattaaggtctt 536  Q
    |||||||||||||||||||||||||||| || | ||||||||||||||    
T  32117337 tgaaatgaaatgttttcaatttgatggagttctccacattaaggtctt 32117290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 52769944 - 52769972
Alignment:
Q  114 gaagaagctaaattagcccacctaaattg 142  Q
    |||||||||||||||||||||||||||||    
T  52769944 gaagaagctaaattagcccacctaaattg 52769972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 54990817 - 54990789
Alignment:
Q  114 gaagaagctaaattagcccacctaaattg 142  Q
    |||||||||||||||||||||||||||||    
T  54990817 gaagaagctaaattagcccacctaaattg 54990789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 35993417 - 35993340
Alignment:
Q  149 ttatgaatataagctgaaaacaatatatggacatgtcataaactttttctaaaagatcgcctaaacagtatcacaagt 226  Q
    ||||||| |||||||||||||||| |||||||| |||||||||| ||| ||  || || || ||||||||||||||||    
T  35993417 ttatgaaaataagctgaaaacaatttatggacacgtcataaactgtttatatcagctctcccaaacagtatcacaagt 35993340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 38854423 - 38854451
Alignment:
Q  114 gaagaagctaaattagcccacctaaattg 142  Q
    |||||||||||||||||||||||||||||    
T  38854423 gaagaagctaaattagcccacctaaattg 38854451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 43065479 - 43065447
Alignment:
Q  157 ataagctgaaaacaatatatggacatgtcataa 189  Q
    |||||||||||||||| ||||||||||||||||    
T  43065479 ataagctgaaaacaatttatggacatgtcataa 43065447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 34939769 - 34939860
Alignment:
Q  141 tggagattttatgaatataagctgaaaacaatatatggacatgtcataaactttttctaaaagatcgcctaaacagtatcacaagtgtttat 232  Q
    |||||| |||||| | |||||||||||||||| |||||||||||||||| || ||||   ||| || || ||||||| |||||| |||||||    
T  34939769 tggagagtttatggaaataagctgaaaacaatttatggacatgtcataagctgtttccgtaagctctccaaaacagtttcacaaatgtttat 34939860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 18263955 - 18263926
Alignment:
Q  114 gaagaagctaaattagcccacctaaattgg 143  Q
    ||||||||||||||||||||||||||||||    
T  18263955 gaagaagctaaattagcccacctaaattgg 18263926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 143
Target Start/End: Original strand, 18562599 - 18562628
Alignment:
Q  114 gaagaagctaaattagcccacctaaattgg 143  Q
    ||||||||||||||||||||||||||||||    
T  18562599 gaagaagctaaattagcccacctaaattgg 18562628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 9027611 - 9027651
Alignment:
Q  149 ttatgaatataagctgaaaacaatatatggacatgtcataa 189  Q
    ||||||| |||||||||||||||  ||||||||||||||||    
T  9027611 ttatgaaaataagctgaaaacaacttatggacatgtcataa 9027651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 28689489 - 28689392
Alignment:
Q  149 ttatgaatataagctgaaaacaatatatggacatgtcataaactttttctaaaagatcgcctaaacagtatcacaagtgtttatactggtagataaac 246  Q
    ||||||| |||||||||||||||  |||||||||||||||| || ||||   ||| || |  ||||||||||  ||||||| |||| |||||||||||    
T  28689489 ttatgaaaataagctgaaaacaacttatggacatgtcataagctgtttccgtaagttctctaaaacagtatctgaagtgttaataccggtagataaac 28689392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 36124948 - 36124919
Alignment:
Q  114 gaagaagctaaattagcccacctaaattgg 143  Q
    ||||||||||||||||||||||||||||||    
T  36124948 gaagaagctaaattagcccacctaaattgg 36124919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 143
Target Start/End: Complemental strand, 3800020 - 3799992
Alignment:
Q  115 aagaagctaaattagcccacctaaattgg 143  Q
    |||||||||||||||||||||||||||||    
T  3800020 aagaagctaaattagcccacctaaattgg 3799992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 12587384 - 12587356
Alignment:
Q  114 gaagaagctaaattagcccacctaaattg 142  Q
    |||||||||||||||||||||||||||||    
T  12587384 gaagaagctaaattagcccacctaaattg 12587356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 15687115 - 15687083
Alignment:
Q  157 ataagctgaaaacaatatatggacatgtcataa 189  Q
    |||||||||||||||| ||||||||||||||||    
T  15687115 ataagctgaaaacaatttatggacatgtcataa 15687083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 143
Target Start/End: Complemental strand, 50901695 - 50901667
Alignment:
Q  115 aagaagctaaattagcccacctaaattgg 143  Q
    |||||||||||||||||||||||||||||    
T  50901695 aagaagctaaattagcccacctaaattgg 50901667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 25896842 - 25896914
Alignment:
Q  174 tatggacatgtcataaactttttctaaaagatcgcctaaacagtatcacaagtgtttatactggtagataaac 246  Q
    |||||||||||||||| || |||||| ||| || |||||||||| ||||||||| | || || ||||||||||    
T  25896842 tatggacatgtcataagctatttctataagctctcctaaacagtctcacaagtgctaatgctagtagataaac 25896914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 30024739 - 30024779
Alignment:
Q  149 ttatgaatataagctgaaaacaatatatggacatgtcataa 189  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  30024739 ttatgaaaataagctgaaaacagtatatggacatgtcataa 30024779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 143
Target Start/End: Original strand, 12793872 - 12793901
Alignment:
Q  114 gaagaagctaaattagcccacctaaattgg 143  Q
    ||||||||||||||||||||||||||||||    
T  12793872 gaagaagctaaattagcccacctaaattgg 12793901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 4691881 - 4691921
Alignment:
Q  149 ttatgaatataagctgaaaacaatatatggacatgtcataa 189  Q
    ||||||| ||||||||||||||| |||||| ||||||||||    
T  4691881 ttatgaaaataagctgaaaacaacatatgggcatgtcataa 4691921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 7949415 - 7949443
Alignment:
Q  114 gaagaagctaaattagcccacctaaattg 142  Q
    |||||||||||||||||||||||||||||    
T  7949415 gaagaagctaaattagcccacctaaattg 7949443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 143
Target Start/End: Complemental strand, 35818203 - 35818175
Alignment:
Q  115 aagaagctaaattagcccacctaaattgg 143  Q
    |||||||||||||||||||||||||||||    
T  35818203 aagaagctaaattagcccacctaaattgg 35818175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 37720175 - 37720203
Alignment:
Q  114 gaagaagctaaattagcccacctaaattg 142  Q
    |||||||||||||||||||||||||||||    
T  37720175 gaagaagctaaattagcccacctaaattg 37720203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 47386752 - 47386780
Alignment:
Q  114 gaagaagctaaattagcccacctaaattg 142  Q
    |||||||||||||||||||||||||||||    
T  47386752 gaagaagctaaattagcccacctaaattg 47386780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 143
Target Start/End: Original strand, 15284 - 15313
Alignment:
Q  114 gaagaagctaaattagcccacctaaattgg 143  Q
    ||||||||||||||||||||||||||||||    
T  15284 gaagaagctaaattagcccacctaaattgg 15313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 8485114 - 8485085
Alignment:
Q  114 gaagaagctaaattagcccacctaaattgg 143  Q
    ||||||||||||||||||||||||||||||    
T  8485114 gaagaagctaaattagcccacctaaattgg 8485085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 143
Target Start/End: Complemental strand, 968476 - 968448
Alignment:
Q  115 aagaagctaaattagcccacctaaattgg 143  Q
    |||||||||||||||||||||||||||||    
T  968476 aagaagctaaattagcccacctaaattgg 968448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 7347952 - 7347924
Alignment:
Q  114 gaagaagctaaattagcccacctaaattg 142  Q
    |||||||||||||||||||||||||||||    
T  7347952 gaagaagctaaattagcccacctaaattg 7347924  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 11569491 - 11569411
Alignment:
Q  152 tgaatataagctgaaaacaatatatggacatgtcataaactttttctaaaagatcgcctaaacagtatcacaagtgtttat 232  Q
    |||| |||||||||||||||  |||| ||||||||||| || |||| | ||| || | |||||||| ||||||||| ||||    
T  11569491 tgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctcttaaacagtctcacaagtggttat 11569411  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 25869311 - 25869263
Alignment:
Q  141 tggagattttatgaatataagctgaaaacaatatatggacatgtcataa 189  Q
    |||||| |||||| | |||||||||||||||  ||||||||||||||||    
T  25869311 tggagagtttatggaaataagctgaaaacaacttatggacatgtcataa 25869263  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 30579450 - 30579421
Alignment:
Q  114 gaagaagctaaattagcccacctaaattgg 143  Q
    ||||||||||||||||||||||||||||||    
T  30579450 gaagaagctaaattagcccacctaaattgg 30579421  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 41487474 - 41487445
Alignment:
Q  114 gaagaagctaaattagcccacctaaattgg 143  Q
    ||||||||||||||||||||||||||||||    
T  41487474 gaagaagctaaattagcccacctaaattgg 41487445  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 143
Target Start/End: Original strand, 22932674 - 22932702
Alignment:
Q  115 aagaagctaaattagcccacctaaattgg 143  Q
    |||||||||||||||||||||||||||||    
T  22932674 aagaagctaaattagcccacctaaattgg 22932702  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 41519226 - 41519254
Alignment:
Q  114 gaagaagctaaattagcccacctaaattg 142  Q
    |||||||||||||||||||||||||||||    
T  41519226 gaagaagctaaattagcccacctaaattg 41519254  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 143
Target Start/End: Complemental strand, 48772052 - 48772024
Alignment:
Q  115 aagaagctaaattagcccacctaaattgg 143  Q
    |||||||||||||||||||||||||||||    
T  48772052 aagaagctaaattagcccacctaaattgg 48772024  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 15486320 - 15486291
Alignment:
Q  114 gaagaagctaaattagcccacctaaattgg 143  Q
    ||||||||||||||||||||||||||||||    
T  15486320 gaagaagctaaattagcccacctaaattgg 15486291  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 16773922 - 16773893
Alignment:
Q  114 gaagaagctaaattagcccacctaaattgg 143  Q
    ||||||||||||||||||||||||||||||    
T  16773922 gaagaagctaaattagcccacctaaattgg 16773893  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 143
Target Start/End: Original strand, 4793042 - 4793070
Alignment:
Q  115 aagaagctaaattagcccacctaaattgg 143  Q
    |||||||||||||||||||||||||||||    
T  4793042 aagaagctaaattagcccacctaaattgg 4793070  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 17028225 - 17028253
Alignment:
Q  114 gaagaagctaaattagcccacctaaattg 142  Q
    |||||||||||||||||||||||||||||    
T  17028225 gaagaagctaaattagcccacctaaattg 17028253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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