View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15283_high_11 (Length: 296)

Name: NF15283_high_11
Description: NF15283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15283_high_11
NF15283_high_11
[»] chr4 (10 HSPs)
chr4 (14-280)||(10483956-10484236)
chr4 (8-220)||(10470027-10470250)
chr4 (16-130)||(40789349-40789463)
chr4 (69-221)||(5203944-5204110)
chr4 (39-136)||(51302943-51303041)
chr4 (160-213)||(40789097-40789150)
chr4 (224-280)||(10470294-10470350)
chr4 (146-210)||(9536637-9536701)
chr4 (41-113)||(38224664-38224736)
chr4 (20-96)||(46762864-46762940)
[»] chr2 (4 HSPs)
chr2 (18-220)||(35060861-35061077)
chr2 (20-109)||(3276057-3276146)
chr2 (224-282)||(35061121-35061179)
chr2 (146-217)||(43111769-43111840)
[»] chr7 (1 HSPs)
chr7 (28-112)||(29339769-29339853)
[»] chr8 (1 HSPs)
chr8 (39-112)||(18888905-18888978)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 10483956 - 10484236
Alignment:
Q  14 gaggacatcatgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgtt 113  Q
    |||||||||||||||||||||||||||||||||| ||||| || |||||  |||||||||||| ||||||||||| |||||||||||||||||||  |||    
T  10483956 gaggacatcatgacgaagaagttccacatcagaagaagcttcaggctttgccatgtagtctgcccaatggttcccttctctaagagtgtgagaaattgtt 10484055  T
Q  114 gcattggtttgttgaagcatt------------tggatgagaa--acatagatatggtatctctcaatgggaccattaataaggttgatacaagcaagag 199  Q
    |||||| ||||||||||||||            ||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10484056 gcattgatttgttgaagcattggttttatctcttggatgagaacaacagagatatggtatctctcaatgggaccattaataaggttgatacaagcaagag 10484155  T
Q  200 aatcagaatagcaagcaagttcacagcataaagctcacctagcaggatgtcatttgaacctggaataaaaccggagaagcc 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10484156 aatcagaatagcaagcaagttcacagcataaagctcacctagcaggatgtcatttgaacctggaataaaaccggagaagcc 10484236  T

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Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 10470027 - 10470250
Alignment:
Q  8 agcagagaggacatcatgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaa 107  Q
    ||||| ||||||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10470027 agcagggaggacatcatgacgaagaagttccacatcagaa---gctccgagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaa 10470123  T
Q  108 accgttgcattggtttgttgaagcat------------ttggatgagaa--acatagatatggtatctctcaatgggaccattaataaggttgatacaag 193  Q
    ||||||| ||||||||||||||||||            |||||||||||  |||||||||||||||||| | ||||||||||||||||||||||  ||||    
T  10470124 accgttggattggtttgttgaagcatttgttttatctcttggatgagaaccacatagatatggtatctcacgatgggaccattaataaggttgacgcaag 10470223  T
Q  194 caagagaatcagaatagcaagcaagtt 220  Q
    |||||||||||||||||||||||||||    
T  10470224 caagagaatcagaatagcaagcaagtt 10470250  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 40789463 - 40789349
Alignment:
Q  16 ggacatcatgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgttgc 115  Q
    ||||||||||| ||||||||||||||| |||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||      
T  40789463 ggacatcatgaagaagaagttccacattagaagaagcttcaagctttgccatgtagtctgcacaatggttcccctctctaagagtgcgagaaaccgttag 40789364  T
Q  116 attggtttgttgaag 130  Q
    |||||||||||||||    
T  40789363 attggtttgttgaag 40789349  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 221
Target Start/End: Original strand, 5203944 - 5204110
Alignment:
Q  69 tagtctgcacaatggttcccctctctaagagtgtgagaaaccgttgcattggtttgttgaagcat------------ttggatgaga--aacatagatat 154  Q
    |||| |||||| || |||||||||||||||||||||||||||||| ||||| |||||||||||||            ||| |||| |  | |||||||||    
T  5203944 tagtttgcacattgattcccctctctaagagtgtgagaaaccgttacattgatttgttgaagcatttgttttatgtcttgtatgataacagcatagatat 5204043  T
Q  155 ggtatctctcaatgggaccattaataaggttgatacaagcaagagaatcagaatagcaagcaagttc 221  Q
    || | ||||||||||| ||||  ||||||||||| ||||||||||||||||||||||||| ||||||    
T  5204044 ggaacctctcaatggggccatatataaggttgatgcaagcaagagaatcagaatagcaagaaagttc 5204110  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 51302943 - 51303041
Alignment:
Q  39 acatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctct-aagagtgtgagaaaccgttgcattggtttgttgaagcatttg 136  Q
    |||||| || ||||| |||||||| |||| ||||||||||| || ||| ||||||| ||||||||||||||||||| |||||  ||| |||||||||||    
T  51302943 acatcataagaagcttcaagctttgtcatatagtctgcacattgattctcctctcttaagagtgtgagaaaccgttacattgagttgatgaagcatttg 51303041  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 40789150 - 40789097
Alignment:
Q  160 ctctcaatgggaccattaataaggttgatacaagcaagagaatcagaatagcaa 213  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  40789150 ctctcaatggggccattaataaagttgatgcaagcaagagaatcagaatagcaa 40789097  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 10470294 - 10470350
Alignment:
Q  224 agcataaagctcacctagcaggatgtcatttgaacctggaataaaaccggagaagcc 280  Q
    |||| ||||||||||||  ||| ||| || |||||||||||||||||||||||||||    
T  10470294 agcagaaagctcacctaatagggtgtaatctgaacctggaataaaaccggagaagcc 10470350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 9536701 - 9536637
Alignment:
Q  146 catagatatggtatctctcaatgggaccattaataaggttgatacaagcaagagaatcagaatag 210  Q
    |||| |||||||| || |||||||| ||||||||||| |  || ||| |||||||||||||||||    
T  9536701 catatatatggtacctttcaatggggccattaataagataaatgcaaacaagagaatcagaatag 9536637  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 38224736 - 38224664
Alignment:
Q  41 atcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgtt 113  Q
    ||||||| |||||| |||||||  |||  |||||||||| || ||   |||||||||||||||||||||||||    
T  38224736 atcagaagaagctctaagctttgccattaagtctgcacactgatttttctctctaagagtgtgagaaaccgtt 38224664  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 46762940 - 46762864
Alignment:
Q  20 atcatgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaa 96  Q
    ||||||| ||||||| || | |||||||  ||||| ||||||| |||||||||||||||| || || ||||| ||||    
T  46762940 atcatgaagaagaagctcaatatcagaagcagctctaagctttatcatgtagtctgcacattgatttccctcactaa 46762864  T

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Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 35060861 - 35061077
Alignment:
Q  18 acatcatgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgttgcat 117  Q
    ||||||||| |||| ||||||||||||||| ||||| | | ||||  |||||||| |||||||||||||| ||||||||||||||||||||| ||| |||    
T  35060861 acatcatgaagaaggagttccacatcagaagaagctactaactttgccatgtagtttgcacaatggttcctctctctaagagtgtgagaaactgttacat 35060960  T
Q  118 tggtttgttgaagcat------------ttggatgaga--aacatagatatggtatctctcaatgggaccattaataaggttgatacaagcaagagaatc 203  Q
    ||||||||||||||||            ||||||||||  ||  ||||||||||| || |||||||||||||||||||||||||| ||||||||||||||    
T  35060961 tggtttgttgaagcatttgttttatgtcttggatgagaacaatgtagatatggtacctttcaatgggaccattaataaggttgatgcaagcaagagaatc 35061060  T
Q  204 agaatagcaagcaagtt 220  Q
    |||||||||||||||||    
T  35061061 agaatagcaagcaagtt 35061077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 3276146 - 3276057
Alignment:
Q  20 atcatgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaac 109  Q
    ||||||| |||||||||| ||||||||| |||||||||| |||  ||| || |||||||| || ||| ||||||||| ||||||||||||    
T  3276146 atcatgaagaagaagttcaacatcagaagaagctccaagttttgccatataatctgcacattgattctcctctctaaaagtgtgagaaac 3276057  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 35061121 - 35061179
Alignment:
Q  224 agcataaagctcacctagcaggatgtcatttgaacctggaataaaaccggagaagcctg 282  Q
    |||| ||||||||||||||||||| ||||  ||||||||||||||| ||||||||||||    
T  35061121 agcagaaagctcacctagcaggatatcatccgaacctggaataaaatcggagaagcctg 35061179  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 43111769 - 43111840
Alignment:
Q  146 catagatatggtatctctcaatgggaccattaataaggttgatacaagcaagagaatcagaatagcaagcaa 217  Q
    |||| |||||||| ||||||||||   |||||||||| || || ||| ||||||||||| ||||||||||||    
T  43111769 catatatatggtacctctcaatggagtcattaataagattaatgcaaacaagagaatcacaatagcaagcaa 43111840  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 29339853 - 29339769
Alignment:
Q  28 gaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgt 112  Q
    ||||||| || |||| |||||||| | ||||||||  |||| ||| |||||  || |||||||||||||||| ||||||||||||    
T  29339853 gaagaagatcaacattagaataagattcaagctttgccatgaagtttgcacgctgtttcccctctctaagagcgtgagaaaccgt 29339769  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 18888905 - 18888978
Alignment:
Q  39 acatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgt 112  Q
    ||||||||| |||||||||| ||  ||||| | |||||||  |||||||| |||||||| || |||||||||||    
T  18888905 acatcagaagaagctccaagtttcatcatgaaatctgcactttggttcccatctctaagcgtatgagaaaccgt 18888978  T

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