View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15283_high_23 (Length: 228)
Name: NF15283_high_23
Description: NF15283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15283_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 24142963 - 24142748
Alignment:
| Q |
1 |
cctaaggtgcacgagcctgagacgcagcccgagaagcaccatatggaggaggaggaggtggagaacacagatgatgttgatgagcagccgcaggtcgagg |
100 |
Q |
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| T |
24142963 |
cctaaggtgcacgagcctgagacgcagcccgagaagcaccatatggaggaggaggaggtggagaacacagatgatgttgatgagcagccgcaggtcgagg |
24142864 |
T |
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| Q |
101 |
tggaggtggagcctcaacagcttcatgactatcatggtggcctgaatgacgtgtttgtgctcacccaataccatcttcatgtggtaagattctacatttt |
200 |
Q |
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| T |
24142863 |
tggaggtggagcctcaacagcttcatgactatcatggtggcctaaatgacgtgtttgtgctcacccaataccatcttcatgtggtaagattctacatttt |
24142764 |
T |
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| Q |
201 |
taacttttttgtacta |
216 |
Q |
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|||||||||||||||| |
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| T |
24142763 |
taacttttttgtacta |
24142748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 40974721 - 40974774
Alignment:
| Q |
5 |
aggtgcacgagcctgagacgcagcccgagaagcaccatatggaggaggaggagg |
58 |
Q |
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||||| ||||||||||| | |||||||||||| ||||||||||||||||||||| |
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| T |
40974721 |
aggtgaacgagcctgagccccagcccgagaagtaccatatggaggaggaggagg |
40974774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 9030477 - 9030564
Alignment:
| Q |
97 |
gaggtggaggtggagcctcaacagcttcatgactatcatggtggcctgaatgacgtgtttgtgctcacccaataccatcttcatgtgg |
184 |
Q |
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| T |
9030477 |
gaggtggaggtggagccacaaccgctaaatgaatatcttgatggcgcacgtgacttgtctgtgctcacccaataccatcttcatgtgg |
9030564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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