View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15283_high_4 (Length: 434)
Name: NF15283_high_4
Description: NF15283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15283_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 59 - 299
Target Start/End: Complemental strand, 29149964 - 29149725
Alignment:
| Q |
59 |
catagaaaagcacaaaaatcactactcaaatttgggtaaaattgcttatccaaccactcaaacaacttcatttattttcttctcctcatccctttctccc |
158 |
Q |
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| T |
29149964 |
catagaaaagcacaaaaatcaccactcaaatttgggtaaaattgcttatccaaccactcaaacaacttcatttattttcttctcctcatcccttcctccc |
29149865 |
T |
|
| Q |
159 |
actcatctaaaatttgtgatctagaatttgaaatctggataactataaatattattttgatatggggtactaaccagtaaccacaaacattctaccatta |
258 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
29149864 |
actcatctaaaatctgtgatctagaatttgaaatctgggtaactataaatattattttgatat-gggtactaaccagtaaccacaaacattctaccatca |
29149766 |
T |
|
| Q |
259 |
tattaatttttgtaataatggtacagaataataaatttata |
299 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |
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| T |
29149765 |
tattaatttttgtaataatggtacagaagaataaatttata |
29149725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 292 - 419
Target Start/End: Complemental strand, 29149506 - 29149379
Alignment:
| Q |
292 |
aatttatagcaatgggtaatactagtactcctaatcaatttcattttatcaacaacaacnnnnnnntcgtattaatcagtgcatttctaccaagtttggc |
391 |
Q |
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| T |
29149506 |
aatttatagcaatgggtaatactcgtactcctaatcaatttcattttatcaacaacaacaaaaaaatcgtattaatcagtgcgtttctaccaagtttggc |
29149407 |
T |
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| Q |
392 |
tagcattttggatttttctgtggagggt |
419 |
Q |
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| T |
29149406 |
tagctttttggatttttctgtggagggt |
29149379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 29152227 - 29152188
Alignment:
| Q |
24 |
aatagtgtattcatcttccatcttcaattacaatccatag |
63 |
Q |
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| T |
29152227 |
aatagtgtattcatcttccatcttcgattgcaatccatag |
29152188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 31 - 218
Target Start/End: Original strand, 38708865 - 38709053
Alignment:
| Q |
31 |
tattcatcttccatcttcaattacaatccatagaaaagcacaaaaatcactactcaaatttgggtaaaattgcttatccaaccactcaaacaacttcatt |
130 |
Q |
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| T |
38708865 |
tattcatcttccatcttcatttacaatccaaagaaaagcacgaaaatcactactcaaatttgggtaaaattgcttacccaaccactcaaacaacctcatt |
38708964 |
T |
|
| Q |
131 |
tattttcttctcctcatccctt-tctcccactcatctaaaatttgtgatctagaatttgaaatctggataactataaatattattttga |
218 |
Q |
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| T |
38708965 |
tattttcttttcctcatcccttccctcccactcatctaaaatctgtgatctagaatttgagatctaggtaactataaatattgttttga |
38709053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 38709093 - 38709260
Alignment:
| Q |
239 |
ccacaaacattctaccattatattaatttttgtaataatggtacagaataataaatttatagcaatgggtaatactagtactcctaa-tcaatttcattt |
337 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
38709093 |
ccacaaacattataccattatattaattttcgtaataatggtaatgaagaataaatttatagcaatggataatactagtactcctaattcaatttcattt |
38709192 |
T |
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| Q |
338 |
tatcaacaacaacnnnnnnntcgtattaatcagtgcatttctacc-aagtttggctagcattttggattttt |
408 |
Q |
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||||||||| || || |||||||||||| |||||||| ||||||||||||| |||||||||||| |
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| T |
38709193 |
tatcaacaaaaa----aaaatcctattaatcagtgtgtttctacctaagtttggctagccttttggattttt |
38709260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 48379632 - 48379719
Alignment:
| Q |
44 |
tcttcaattacaatccatagaaaagcacaaaaatcactactca--aatttgggtaaaattgcttatccaaccactcaaacaacttcat |
129 |
Q |
| |
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|||||| || |||| ||||||| | ||||||||||| ||||| |||||||||||||||| ||||||||| ||| |||||||||||| |
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| T |
48379632 |
tcttcattttcaattcatagaagaacacaaaaatcagaactcatgaatttgggtaaaattgtttatccaacaactgaaacaacttcat |
48379719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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