View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15283_high_7 (Length: 323)
Name: NF15283_high_7
Description: NF15283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15283_high_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 16394915 - 16394623
Alignment:
| Q |
13 |
aatattatttgatatcgaccaattccaagagcttgataattcccatgacaattataatacatctaataatatagtgaaagatttttcaataaaatatatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16394915 |
aatattatttgatatcgaccaattccaagagcttgataattcccatgacaat-ataatacatctaataatatagtgaaagatttttcaataaaatatatt |
16394817 |
T |
|
| Q |
113 |
tgtgattattgtttgacattagttcatcaaaacaaacaaaatgttagtacaactggcattttccaaattcaatcataattttgaaaatgctagttgtaac |
212 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16394816 |
tgtgattattgtttgacaatagttcaccaaaacaaacaaaatgttagtacaactggcattttccaaattcaatcataattttggaaatgctagttgtaac |
16394717 |
T |
|
| Q |
213 |
aacatttactggtttatgaactaatccttcctgattgtatgttacagattcttgcgttgattctactgccacacaatgatcacaagtatattct |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
16394716 |
aacatttactggtttatgaactaatccttcctgattgtatgttacagattcttgcgttgattctacttccacacaatgatcaaaagtatattct |
16394623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 15527323 - 15527247
Alignment:
| Q |
130 |
attagttcatcaaaacaaacaaaatgttagtacaactggcattttccaaattcaatcataattttgaaaatgctagt |
206 |
Q |
| |
|
||||||||||| ||| | | ||||| ||| || ||||||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
15527323 |
attagttcatctaaatagagaaaatattactataactggcattttcaaaattcaatcataatcttgaaaattctagt |
15527247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 14308357 - 14308437
Alignment:
| Q |
14 |
atattatttgatatcgaccaattccaagagcttgataattcccatgacaattataatacatctaataatatagtgaaagat |
94 |
Q |
| |
|
||||| |||||| || ||||||||||||||||||||||||| ||||| ||||||| || ||| || | | ||||||||||| |
|
|
| T |
14308357 |
atattgtttgatttcaaccaattccaagagcttgataattcgcatgagaattatattatatcaaaaactttagtgaaagat |
14308437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University