View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15283_high_8 (Length: 321)
Name: NF15283_high_8
Description: NF15283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15283_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 7628003 - 7627708
Alignment:
| Q |
18 |
aggtctaaatcttgaacttttttgactaagtcaagtttagacatagtaaactctaactcggtctagtctattcatatacccctatgtagggccattaatt |
117 |
Q |
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| T |
7628003 |
aggtctaaatcttgaacctttttgactaagtcaagtttagacatagtaaattctaactcggtctagtctattcataaacccctatgtagggccattaatt |
7627904 |
T |
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| Q |
118 |
taagagatttgagaaataataatttgagttcttagaagagataagtcatgtcattgtgaccgttagttcagttgacaatgtcgatgtagtaagtatggac |
217 |
Q |
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| T |
7627903 |
taagagatttgagaaataataatttgagttcttagaagagataagtcatgtcattgtgaccgttggttcagttgacaatgtcgatgtagtaagtatggac |
7627804 |
T |
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| Q |
218 |
actttcactcttattgaaatttaggacctcccatttgtatgtgtgtgagtttctattgttttgtatgtggaaaaaatgggtaagaaagatgatgat |
313 |
Q |
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| T |
7627803 |
actttcactcttattgaaatttaggacctcgcatttgtatgtgtgtgagtttctattgttttgtatgtggaaaaaatgggtaggaaagatgatgat |
7627708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 7628567 - 7628496
Alignment:
| Q |
18 |
aggtctaaatcttgaacttttttgactaagtcaagtttagacatagtaaactctaactcggtctagtctatt |
89 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||| ||||| ||||||| | ||||||||||| |
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| T |
7628567 |
aggtctaaatcttgaacctttttgactaagtcaagtttaaacatcgtaaattctaacttgatctagtctatt |
7628496 |
T |
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