View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15283_low_12 (Length: 273)

Name: NF15283_low_12
Description: NF15283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15283_low_12
NF15283_low_12
[»] chr7 (13 HSPs)
chr7 (14-240)||(9396688-9396914)
chr7 (18-243)||(1878035-1878262)
chr7 (14-256)||(12222242-12222487)
chr7 (25-258)||(4549783-4550016)
chr7 (28-257)||(15870905-15871133)
chr7 (14-257)||(11016086-11016344)
chr7 (115-221)||(2500970-2501075)
chr7 (16-168)||(11572067-11572220)
chr7 (193-257)||(11572227-11572290)
chr7 (193-241)||(14114195-14114244)
chr7 (193-241)||(14423845-14423894)
chr7 (93-170)||(3778409-3778488)
chr7 (14-163)||(23126128-23126278)
[»] chr2 (5 HSPs)
chr2 (42-258)||(27940097-27940312)
chr2 (25-146)||(22524600-22524721)
chr2 (196-251)||(22524753-22524808)
chr2 (115-257)||(19643530-19643666)
chr2 (23-146)||(19320168-19320291)
[»] chr8 (7 HSPs)
chr8 (25-211)||(17689514-17689700)
chr8 (115-258)||(27739984-27740126)
chr8 (25-152)||(24635593-24635720)
chr8 (115-253)||(24497998-24498135)
chr8 (182-253)||(24635443-24635514)
chr8 (207-251)||(17688106-17688150)
chr8 (57-213)||(12541789-12541943)
[»] chr3 (15 HSPs)
chr3 (114-258)||(19657874-19658018)
chr3 (160-244)||(1467020-1467104)
chr3 (14-241)||(17761896-17762122)
chr3 (14-241)||(19063216-19063442)
chr3 (43-164)||(1469952-1470073)
chr3 (132-221)||(17768918-17769007)
chr3 (132-221)||(19070219-19070308)
chr3 (15-132)||(13932171-13932290)
chr3 (67-161)||(19696002-19696096)
chr3 (67-161)||(19705616-19705710)
chr3 (115-243)||(12409753-12409879)
chr3 (77-145)||(19643359-19643427)
chr3 (14-162)||(15552265-15552414)
chr3 (14-156)||(15647952-15648095)
chr3 (193-241)||(11513977-11514025)
[»] chr6 (5 HSPs)
chr6 (43-258)||(14758427-14758641)
chr6 (131-252)||(17467853-17467973)
chr6 (193-252)||(15542131-15542190)
chr6 (14-257)||(20462039-20462281)
chr6 (18-166)||(15477595-15477744)
[»] chr4 (7 HSPs)
chr4 (133-245)||(24619785-24619898)
chr4 (149-245)||(23087815-23087910)
chr4 (25-130)||(23087897-23088002)
chr4 (42-146)||(2940583-2940687)
chr4 (41-163)||(17526229-17526350)
chr4 (93-147)||(10328228-10328282)
chr4 (193-221)||(17526344-17526372)
[»] scaffold0092 (1 HSPs)
scaffold0092 (16-163)||(8280-8428)
[»] scaffold0031 (1 HSPs)
scaffold0031 (14-253)||(104972-105211)
[»] chr1 (7 HSPs)
chr1 (115-253)||(25399503-25399641)
chr1 (115-221)||(31359463-31359567)
chr1 (93-204)||(22640429-22640539)
chr1 (123-223)||(10154290-10154389)
chr1 (42-102)||(31359564-31359624)
chr1 (14-102)||(25399638-25399728)
chr1 (77-134)||(21616932-21616988)
[»] scaffold0012 (1 HSPs)
scaffold0012 (43-142)||(173569-173668)
[»] chr5 (2 HSPs)
chr5 (14-126)||(26118400-26118514)
chr5 (41-140)||(12079079-12079178)
[»] scaffold0606 (1 HSPs)
scaffold0606 (93-145)||(5716-5768)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 9396688 - 9396914
Alignment:
Q  14 agactaaaatttatgtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaa 113  Q
    |||||||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  9396688 agactaaaatttatgtcttaaaaccaagttttgcttatggaataacaaattagagcaaaggaattttcaagggaaacttagttgcaagttagaatctgaa 9396787  T
Q  114 gaagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9396788 gaagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagt 9396887  T
Q  214 tagttattatggatatttgaagacaca 240  Q
    |||||||||||||||||||||||||||    
T  9396888 tagttattatggatatttgaagacaca 9396914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 1878035 - 1878262
Alignment:
Q  18 taaaatttat--gtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaaga 115  Q
    ||||||||||  |||||||||| | ||||||||| || || ||||| | | |||||| || |||||||| ||| ||||||||||||| ||||| |||| |    
T  1878035 taaaatttataagtcttaaaacaaagtattggttctgaaagaacaattgagagcaaaagaattttcaagagaagcttagttgcaagtcagaatttgaaaa 1878134  T
Q  116 agtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagtta 215  Q
    ||||||||||||||||||||  ||||||||  ||||| ||| ||||||||||||| ||| | |||||||||||||||||||||||||||| || ||||||    
T  1878135 agtcagagtctgaagactattaagaagctggctgtcagagtctgaagttcacccagagtctaaagattcatcagaagctgaagtgaagaatctaaagtta 1878234  T
Q  216 gttattatggatatttgaagacacaaat 243  Q
    ||| ||||||||||||||||||||||||    
T  1878235 gtttttatggatatttgaagacacaaat 1878262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 12222242 - 12222487
Alignment:
Q  14 agactaaaatttat--gtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctg 111  Q
    ||||||||||||||  |||||||||  | ||||||||| ||||| ||||| ||| || ||| || ||||||||||||  |||||||||||| ||||| ||    
T  12222242 agactaaaatttatatgtcttaaaaaaaagtattggttctggaagaacaagttagagaaaatgaattttcaagggaagattagttgcaagtcagaatttg 12222341  T
Q  112 aagaagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaa 211  Q
    ||||||||||||| ||||||||||||| ||||||| ||| | ||| ||||||||||||  ||| ||||||||||||||||| | ||||||||||| ||||    
T  12222342 aagaagtcagagtttgaagactatccaaaagctgactgttagagtctgaagttcaccccgagtctgaagattcatcagaagttaaagtgaagaacatgaa 12222441  T
Q  212 gtt-agttattatggatatttgaagacacaaatatccagaaggaat 256  Q
    ||| | || |||||||||||||||||||||||||| || |||||||    
T  12222442 gttaatttgttatggatatttgaagacacaaatatgcaaaaggaat 12222487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 25 - 258
Target Start/End: Complemental strand, 4550016 - 4549783
Alignment:
Q  25 tatgtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaagaagtcagagt 124  Q
    ||||||||||| | | ||||||||| || || ||||||  | |||||| || |||||||||||| ||||||| ||||| ||| ||| ||| | ||||| |    
T  4550016 tatgtcttaaagcaaagtattggttctgaaagaacaaaagagagcaaaagaattttcaagggaagcttagttacaagtcagagtctcaagtaatcagaat 4549917  T
Q  125 ctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagttagttattatg 224  Q
     || |||| ||||||||||||| | ||| ||| ||||||||||||||||| |||||  |||||||||||| |||||||||||||||||||| ||  ||||    
T  4549916 ttgcagaccatccagaagctgactatcagagtctgaagttcacccaaagtctgaaggatcatcagaagctaaagtgaagaacctgaagttaattgatatg 4549817  T
Q  225 gatatttgaagacacaaatatccagaaggaataa 258  Q
    || ||||||||||| |||| | ||||||||||||    
T  4549816 gaaatttgaagacataaatgtgcagaaggaataa 4549783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 257
Target Start/End: Original strand, 15870905 - 15871133
Alignment:
Q  28 gtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaagaagtcagagtctg 127  Q
    |||||||||| | ||||| ||| |||||  |||||||| ||||||||| ||| |||||||| ||||||||||||| ||| ||| |||   ||||||| ||    
T  15870905 gtcttaaaacaaagtatttgttctggaagtacaaattagagcaaaggaatttacaagggaagcttagttgcaagtcagagtctaaaggcatcagagtgtg 15871004  T
Q  128 aagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagttagttattatggat 227  Q
    ||||| ||||||||||| | ||||| ||  ||||| ||||| | ||| ||||  ||||||| |  |||||||||||||||||||||||||||||||||||    
T  15871005 aagacaatccagaagctaactgtcagagactgaagatcacctagagtctgaa-tttcatcaaagtctgaagtgaagaacctgaagttagttattatggat 15871103  T
Q  228 atttgaagacacaaatatccagaaggaata 257  Q
    |||| |||  || ||| | |||||||||||    
T  15871104 attttaagtaaccaatgtgcagaaggaata 15871133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 11016344 - 11016086
Alignment:
Q  14 agactaaaatttat--gtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctg 111  Q
    ||||||||||||||  |||||||| | | | ||||||| ||||| ||||||||| ||||||||| |||| |||| ||  ||| |||||||| ||||||||    
T  11016344 agactaaaatttatatgtcttaaagcaaagcattggttttggaagaacaaattaaagcaaaggaatttttaaggaaatattatttgcaagtcagaatctg 11016245  T
Q  112 aagaagtcag-------------agtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaag 198  Q
      |||| |||             |||| |||||||||| | ||||||| || || ||| | ||||||||||  ||   ||| ||| ||||||||||||||    
T  11016244 gtgaagacagagtcggaagacaaagtcggaagactatctacaagctgactgacagagtttaaagttcacccctagcccgaaaattgatcagaagctgaag 11016145  T
Q  199 tgaagaacctgaagttagttattatggatatttgaagacacaaatatccagaaggaata 257  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  11016144 tgaagaacctgaagttagttattatagatatttgaagacacaaatatgcagaaggaata 11016086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 2500970 - 2501075
Alignment:
Q  115 aagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagtt 214  Q
    |||||||||| ||||||| ||| ||||||||| ||||| ||| ||||||||||| | ||||||||| ||| |||||  ||||||||||||||||||||||    
T  2500970 aagtcagagtttgaagaccatcaagaagctgactgtcagagtctgaagttcacctacagtttgaag-ttcgtcagagtctgaagtgaagaacctgaagtt 2501068  T
Q  215 agttatt 221  Q
    |||||||    
T  2501069 agttatt 2501075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 11572067 - 11572220
Alignment:
Q  16 actaaaatttat--gtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaa 113  Q
    ||||||||||||  |||||||||| | ||||||||||||||| ||||||| | |||||| || ||| |||| ||| ||||||||||||| ||| ||||||    
T  11572067 actaaaatttataagtcttaaaacaaggtattggttatggaagaacaaatgagagcaaaagaatttacaagagaagcttagttgcaagtcagagtctgaa 11572166  T
Q  114 gaagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacc 168  Q
    ||  |  |||| ||||||| || |||||||||| ||||| ||||||||| |||||    
T  11572167 gacattcgagtgtgaagaccat-cagaagctgactgtcagagtatgaagatcacc 11572220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 11572227 - 11572290
Alignment:
Q  193 ctgaagtgaagaacctgaagttagttattatggatatttgaagacacaaatatccagaaggaata 257  Q
    |||||||||||||||||||||||||||  | |||| ||||||||||||||| | |||||||||||    
T  11572227 ctgaagtgaagaacctgaagttagtta-aacggatttttgaagacacaaatgtgcagaaggaata 11572290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 14114244 - 14114195
Alignment:
Q  193 ctgaagtgaagaacctgaagttagttatta-tggatatttgaagacacaa 241  Q
    |||||||||||||| ||||||||||||||| ||| ||||||| |||||||    
T  14114244 ctgaagtgaagaacttgaagttagttattattggttatttgaggacacaa 14114195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 14423894 - 14423845
Alignment:
Q  193 ctgaagtgaagaacctgaagttagttatta-tggatatttgaagacacaa 241  Q
    |||||||||||||| ||||||||||||||| ||| ||||||| |||||||    
T  14423894 ctgaagtgaagaacttgaagttagttattattggttatttgaggacacaa 14423845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 3778409 - 3778488
Alignment:
Q  93 agttgcaagttagaatctgaagaagtcagagtctgaagactatccagaagctga--ttgtcaaagtatgaagttcaccca 170  Q
    ||||||||||  |||||| |||||||||||||||||||  |||||| ||| |||   ||||| ||| |||||||||||||    
T  3778409 agttgcaagtccgaatctaaagaagtcagagtctgaagtttatccaaaagatgaatgtgtcagagtctgaagttcaccca 3778488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 23126278 - 23126128
Alignment:
Q  14 agactaaaatttat--gtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctg 111  Q
    ||||||||||||||  |||||||||| |  |||||||| ||  | ||||| | | |||||| || ||| |||||||| ||||||||||| |  || ||||    
T  23126278 agactaaaatttataagtcttaaaacaagatattggttctgatagaacaattgagagcaaaagaatttacaagggaagcttagttgcaattctgagtctg 23126179  T
Q  112 aagaagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagt 163  Q
    |||   ||| ||| ||||||| ||| ||||||||||||||| ||| ||||||    
T  23126178 aaggcatcaaagtttgaagacaatc-agaagctgattgtcagagtctgaagt 23126128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 42 - 258
Target Start/End: Complemental strand, 27940312 - 27940097
Alignment:
Q  42 tattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaagaagtcagagtctgaagactatccagaa 141  Q
    |||||||| ||||| |||||| || |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  27940312 tattggttttggaagaacaaaatagagcaaaggagttttcaagggaagcttagttgcaagtcagaatctgaagaagtcagagtctgaagactatctagaa 27940213  T
Q  142 gctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagttagttattatggatatttgaagacacaa 241  Q
    | ||| ||||| ||| ||||||||||||| |||| |||||||||| | || || || |||||||| ||||||||  ||||||||||| ||||||||||||    
T  27940212 gatgactgtcagagtctgaagttcacccagagttcgaagattcataaaaaact-aaatgaagaacttgaagttatatattatggataattgaagacacaa 27940114  T
Q  242 atatccagaaggaataa 258  Q
    | || ||||||||||||    
T  27940113 acatgcagaaggaataa 27940097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 22524600 - 22524721
Alignment:
Q  25 tatgtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaagaagtcagagt 124  Q
    ||||||||||||||| ||||||||| ||||| ||||||||| ||||||  | ||||||||||||  |||||||||||| |||||||||||||||||||||    
T  22524600 tatgtcttaaaaccaagtattggttctggaagaacaaattagagcaaataaattttcaagggaagtttagttgcaagtcagaatctgaagaagtcagagt 22524699  T
Q  125 ctgaagactatccagaagctga 146  Q
    |||||||| |||||||||||||    
T  22524700 ctgaagaccatccagaagctga 22524721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 22524753 - 22524808
Alignment:
Q  196 aagtgaagaacctgaagttagttattatggatatttgaagacacaaatatccagaa 251  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  22524753 aagtgaagaacctgaagttagttattatgaatatttgaagacacaaatatgcagaa 22524808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 257
Target Start/End: Original strand, 19643530 - 19643666
Alignment:
Q  115 aagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagtt 214  Q
    |||||||||||||||||| ||| ||||||||| |||   ||| |||||| |||| | ||| ||||| |||||||||  ||||||||||||||||||||||    
T  19643530 aagtcagagtctgaagaccatc-agaagctgactgtttgagtctgaagt-cacctagagtctgaag-ttcatcagagtctgaagtgaagaacctgaagtt 19643626  T
Q  215 agttattatggatatttgaagacacaaatatccagaaggaata 257  Q
    |   ||  ||| ||||||||||||||| | | |||||||||||    
T  19643627 a---atattggttatttgaagacacaagtgtgcagaaggaata 19643666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 19320168 - 19320291
Alignment:
Q  23 tttatgtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaactta-gttgcaagttagaatctgaagaagtcag 121  Q
    ||||||| ||||||| | ||||| ||| ||||| ||||||| | |||||| || | | ||| | || |||| ||||||||| | | ||||||||||||||    
T  19320168 tttatgttttaaaacaaagtattagttctggaagaacaaatgaaagcaaaagaatctacaaagaaagcttatgttgcaagtcaaagtctgaagaagtcag 19320267  T
Q  122 agtctgaagactatccagaagctga 146  Q
    ||||||||||| || ||||||||||    
T  19320268 agtctgaagaccat-cagaagctga 19320291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 17689700 - 17689514
Alignment:
Q  25 tatgtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaagaagtcagagt 124  Q
    ||||||||||||| | ||||||||| ||||| ||||||||| ||||||||| |||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  17689700 tatgtcttaaaacaaagtattggttctggaacaacaaattagagcaaaggaattttcaagggaagcttagttgcaagtcagaatctaaagaagtcagagt 17689601  T
Q  125 ctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaa 211  Q
     ||||| ||||||||||| ||  | ||| ||| ||||||||||||| ||| ||||||||||||||| |||||||  |||||||||||    
T  17689600 atgaagtctatccagaagttggctttcagagtctgaagttcacccagagtctgaagattcatcagatgctgaagcaaagaacctgaa 17689514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 115 - 258
Target Start/End: Complemental strand, 27740126 - 27739984
Alignment:
Q  115 aagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagtt 214  Q
    |||||||||||||||||||||||| ||||||| ||| | | | ||||||||||| | | | ||||||| |||||||||||||| ||||||||||||||||    
T  27740126 aagtcagagtctgaagactatccaaaagctgactgttagactctgaagttcacctagaatctgaagat-catcagaagctgaaatgaagaacctgaagtt 27740028  T
Q  215 agttattatggatatttgaagacacaaatatccagaaggaataa 258  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  27740027 agttattatggatatttgaagacacaaatatgcagaaggaataa 27739984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 24635720 - 24635593
Alignment:
Q  25 tatgtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaagaagtcagagt 124  Q
    ||||||||||||  |  |||||||| ||||||||||||||| || | |||| |||||||| ||| |  ||||||||||  || |||||||||||| ||||    
T  24635720 tatgtcttaaaataaattattggttctggaataacaaattagagtagaggaattttcaagagaagccaagttgcaagtcggagtctgaagaagtcggagt 24635621  T
Q  125 ctgaagactatccagaagctgattgtca 152  Q
    |||||||| ||||| |||||||||||||    
T  24635620 ctgaagaccatccaaaagctgattgtca 24635593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 253
Target Start/End: Original strand, 24497998 - 24498135
Alignment:
Q  115 aagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagtt 214  Q
    |||||||| |||||||| |||||||||||||| ||||| ||| |||| ||||| || ||| ||||| || |||||||| ||||||||||| ||| ||||     
T  24497998 aagtcagaatctgaagattatccagaagctgactgtcagagtctgaaattcactcacagtctgaag-tttatcagaagttgaagtgaagatcctaaagtc 24498096  T
Q  215 agttattatggatatttgaagacacaaatatccagaagg 253  Q
    | ||||||| | |||||||||| |||||| | |||||||    
T  24498097 aattattatagttatttgaagatacaaatgttcagaagg 24498135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 24635514 - 24635443
Alignment:
Q  182 ttcatcagaagctgaagtgaagaacctgaagttagttattatggatatttgaagacacaaatatccagaagg 253  Q
    ||||||||||||| ||||||||| ||||||||| ||||| |||  ||||||||||||| || ||||| ||||    
T  24635514 ttcatcagaagctaaagtgaagaccctgaagttggttatgatgattatttgaagacaccaagatccataagg 24635443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 17688150 - 17688106
Alignment:
Q  207 ctgaagttagttattatggatatttgaagacacaaatatccagaa 251  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||    
T  17688150 ctgaaattagttattatggatatttgaagacaaaaatatgcagaa 17688106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 213
Target Start/End: Complemental strand, 12541943 - 12541789
Alignment:
Q  57 aacaaattatagcaaaggagttttcaagggaaactta-gttgcaagttagaatctgaagaagtcagagtctgaagactatccagaagctgattgtcaaag 155  Q
    ||||||| | |||||| || ||| ||| |||| |||| |||| |||| ||| ||||||||| ||||||||||||||| || ||||||||||   ||| ||    
T  12541943 aacaaatgagagcaaatgaatttacaaaggaagcttaagttgtaagtcagagtctgaagaaatcagagtctgaagaccat-cagaagctgacaatcagag 12541845  T
Q  156 tatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagt 213  Q
    ||||||| ||||| | ||| ||||| |||||||||  | ||||| |||||||| ||||    
T  12541844 tatgaag-tcacctagagtctgaag-ttcatcagagtcagaagtaaagaacctaaagt 12541789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 114 - 258
Target Start/End: Original strand, 19657874 - 19658018
Alignment:
Q  114 gaagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagt 213  Q
    ||||||||||||||||||| ||||||||| | | | ||| ||| ||||||||||| | |||||||||||||||| |||||||||||||||||||||||||    
T  19657874 gaagtcagagtctgaagaccatccagaagttaactatcagagtctgaagttcaccaagagtttgaagattcatcggaagctgaagtgaagaacctgaagt 19657973  T
Q  214 tagttattatggatatttgaagacacaaatatccagaaggaataa 258  Q
    || ||||||||||||||||||||| || |||| ||||||||||||    
T  19657974 taattattatggatatttgaagacccagatatgcagaaggaataa 19658018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 1467104 - 1467020
Alignment:
Q  160 aagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagttagttattatggatatttgaagacacaaata 244  Q
    ||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||    
T  1467104 aagttcacccatagtttgaagattcatcagaagctggaatgaagaacatgaagttagttattatggatatttgaagacacaaata 1467020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 17761896 - 17762122
Alignment:
Q  14 agactaaaatttat--gtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctg 111  Q
    ||||||||||||||  |||||| ||| |  |||||||| || || ||||| | | || ||| || ||||||||| || |||||||| ||||  || ||||    
T  17761896 agactaaaatttataagtcttacaacaagatattggttctgaaagaacaattgagagaaaaagaattttcaaggaaagcttagttgtaagtctgagtctg 17761995  T
Q  112 aagaagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaa 211  Q
    ||||| | ||||||||||||| ||| |||||||||  |||| ||| ||||||| ||| | ||||||||| |||||||||  |||||||||||||||||||    
T  17761996 aagaattaagagtctgaagaccatc-agaagctgaaagtcagagtctgaagtt-acctagagtttgaag-ttcatcagagtctgaagtgaagaacctgaa 17762092  T
Q  212 gttagttattatggatatttgaagacacaa 241  Q
    || |||||   ||| |||||||||||||||    
T  17762093 gtcagttaaattggttatttgaagacacaa 17762122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 19063216 - 19063442
Alignment:
Q  14 agactaaaatttat--gtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctg 111  Q
    ||||||||||||||  |||||| ||| |  |||||||| || || ||||| | | || ||| || ||||||||| || |||||||| ||||  || ||||    
T  19063216 agactaaaatttataagtcttacaacaagatattggttctgaaagaacaattgagagaaaaagaattttcaaggaaagcttagttgtaagtctgagtctg 19063315  T
Q  112 aagaagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaa 211  Q
    ||||| | ||||||||||||| ||| |||||||||  |||| ||| ||||||| ||| | ||||||||| |||||||||  |||||||||||||||||||    
T  19063316 aagaattaagagtctgaagaccatc-agaagctgaaagtcagagtctgaagtt-acctagagtttgaag-ttcatcagagtctgaagtgaagaacctgaa 19063412  T
Q  212 gttagttattatggatatttgaagacacaa 241  Q
    || |||||   ||| |||||||||||||||    
T  19063413 gtcagttaaattggttatttgaagacacaa 19063442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 164
Target Start/End: Complemental strand, 1470073 - 1469952
Alignment:
Q  43 attggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaagaagtcagagtctgaagactatccagaag 142  Q
    ||||||| ||||| ||||||||| || |||||| ||| |||| ||| ||||||||| ||| |||| ||||||||||||||||||||||  |||| |||||    
T  1470073 attggttttggaagaacaaattagagtaaaggaatttacaagagaagcttagttgctagtcagaaactgaagaagtcagagtctgaagtttatcgagaag 1469974  T
Q  143 ctgattgtcaaagtatgaagtt 164  Q
    |||| ||||| ||| |||||||    
T  1469973 ctgagtgtcagagtctgaagtt 1469952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 17768918 - 17769007
Alignment:
Q  132 ctatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagttagttatt 221  Q
    ||||||| ||||||| ||||| ||| | || |||||||| ||| |||||||||||||||||||||||||||||||| |||| | ||||||    
T  17768918 ctatccataagctgactgtcagagtctaaatttcacccagagtctgaagattcatcagaagctgaagtgaagaacccgaaggtggttatt 17769007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 19070219 - 19070308
Alignment:
Q  132 ctatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagttagttatt 221  Q
    ||||||| ||||||| ||||| ||| | || |||||||| ||| |||||||||||||||||||||||||||||||| |||| | ||||||    
T  19070219 ctatccataagctgactgtcagagtctaaatttcacccagagtctgaagattcatcagaagctgaagtgaagaacccgaaggtggttatt 19070308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 13932290 - 13932171
Alignment:
Q  15 gactaaaatttat--gtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctga 112  Q
    |||||||||||||  |||||||||| ||||||||||| ||||| ||||| | | |||||| || ||||||| |||| ||  ||||||||| ||| | |||    
T  13932290 gactaaaatttataagtcttaaaacaatgtattggttctggaagaacaattgaaagcaaaagaattttcaaaggaagctatgttgcaagtcagattttga 13932191  T
Q  113 agaagtcagagtctgaagac 132  Q
    |||  ||||||||| |||||    
T  13932190 agacatcagagtctaaagac 13932171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 19696096 - 19696002
Alignment:
Q  67 agcaaaggagttttcaagggaaactta-gttgcaagttagaatctgaagaagtcagagtctgaagactatccagaagctgattgtcaaagtatgaa 161  Q
    ||||||||| ||| ||| |||| |||| ||||||||||||| ||||||||||||||||| ||||||| || |||||| |||  |||||||| ||||    
T  19696096 agcaaaggattttacaaaggaagcttatgttgcaagttagagtctgaagaagtcagagtttgaagaccat-cagaagttgacagtcaaagtctgaa 19696002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 19705710 - 19705616
Alignment:
Q  67 agcaaaggagttttcaagggaaactta-gttgcaagttagaatctgaagaagtcagagtctgaagactatccagaagctgattgtcaaagtatgaa 161  Q
    ||||||||| ||| ||| |||| |||| ||||||||||||| ||||||||||||||||| ||||||| || |||||| |||  |||||||| ||||    
T  19705710 agcaaaggattttacaaaggaagcttatgttgcaagttagagtctgaagaagtcagagtttgaagaccat-cagaagttgacagtcaaagtctgaa 19705616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 243
Target Start/End: Original strand, 12409753 - 12409879
Alignment:
Q  115 aagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaa-gtttgaagattcatcagaagctgaagtgaagaacctgaagt 213  Q
    |||| ||||||||||||| ||| ||||| ||| ||||| ||| ||||| ||||||| | |  ||||||  |||||||  ||||||||||||||||||||     
T  12409753 aagttagagtctgaagaccatc-agaagatgactgtcagagtctgaagatcacccagacgcctgaagac-catcagagtctgaagtgaagaacctgaagg 12409850  T
Q  214 tagttattatggatatttgaagacacaaat 243  Q
    ||||||  ||||| ||||||||||||||||    
T  12409851 tagtta-aatggaaatttgaagacacaaat 12409879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 19643359 - 19643427
Alignment:
Q  77 ttttcaagggaaacttagttgcaagttagaatctgaagaagtcagagtctgaagactatccagaagctg 145  Q
    |||||||| ||| | ||||||||||| ||| ||||||||||||||| ||||| ||||| | ||||||||    
T  19643359 ttttcaagagaagcctagttgcaagtcagactctgaagaagtcagactctgacgactacctagaagctg 19643427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 15552414 - 15552265
Alignment:
Q  14 agactaaaatttat--gtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctg 111  Q
    ||||||||||||||  |||||||||| | ||||||||||||||| || || | | |||||  || ||| |||| ||| ||| |||||||||   | ||||    
T  15552414 agactaaaatttatacgtcttaaaacaaggtattggttatggaagaaaaattgagagcaagcgaatttacaagagaagctttgttgcaagtcttagtctg 15552315  T
Q  112 aagaagtcagagtctgaagactatccagaagctgattgtcaaagtatgaag 162  Q
    ||||  ||||||||| ||||  ||| | ||||||||||||||||| |||||    
T  15552314 aagacatcagagtctaaagagcatcga-aagctgattgtcaaagtttgaag 15552265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 15648095 - 15647952
Alignment:
Q  14 agactaaaatttatg--tcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctg 111  Q
    ||||||||||||||   ||||||||| | ||||||||| ||||| || || | | |||||  || ||| |||| ||| ||| ||||||||||  | ||||    
T  15648095 agactaaaatttatacatcttaaaacaaggtattggttctggaagaaaaattaagagcaagcgaatttacaagagaagctttgttgcaagttttagtctg 15647996  T
Q  112 aagaagtcagagtctgaagactatccagaagctgattgtcaaagt 156  Q
    ||||  ||||||||||||||  || || |||||||||||||||||    
T  15647995 aagacatcagagtctgaagagcat-cataagctgattgtcaaagt 15647952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 11514025 - 11513977
Alignment:
Q  193 ctgaagtgaagaacctgaagttagttattatggatatttgaagacacaa 241  Q
    |||||||||||||||||||||||||| |  ||| ||||||||| |||||    
T  11514025 ctgaagtgaagaacctgaagttagttttattggttatttgaaggcacaa 11513977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 43 - 258
Target Start/End: Complemental strand, 14758641 - 14758427
Alignment:
Q  43 attggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaagaagtcagagtctgaagactatccagaag 142  Q
    ||||||| ||||| ||||||||| || |||||| |||  ||| ||| ||||||| || || ||||||||| ||||||||||||||||| |||||||||||    
T  14758641 attggttctggaagaacaaattagaggaaaggaatttagaagagaagcttagtttcatgtcagaatctgatgaagtcagagtctgaagtctatccagaag 14758542  T
Q  143 ctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagttagttattatggatatttgaagacacaaa 242  Q
    || |  || | ||| ||||| ||| | | | | ||||||| |||| ||||||||||||||||||||  || |||||||||||||||||||||||||||||    
T  14758541 ctaacagttagagtctgaagatcatcaagaatctgaagat-catctgaagctgaagtgaagaacctagagctagttattatggatatttgaagacacaaa 14758443  T
Q  243 tatccagaaggaataa 258  Q
    ||| ||||||||||||    
T  14758442 tatgcagaaggaataa 14758427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 131 - 252
Target Start/End: Original strand, 17467853 - 17467973
Alignment:
Q  131 actatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagttagttattatggatatt 230  Q
    |||||||||||||||||||| | ||| |||||||||| || ||| | ||||| |||||||||| | ||| |||||||| |||| ||||||||||||||||    
T  17467853 actatccagaagctgattgtgagagtctgaagttcactcagagtcttaagat-catcagaagcggcagtaaagaacctaaagtcagttattatggatatt 17467951  T
Q  231 tgaagacacaaatatccagaag 252  Q
    ||||||||||||||| ||||||    
T  17467952 tgaagacacaaatatgcagaag 17467973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 15542190 - 15542131
Alignment:
Q  193 ctgaagtgaagaacctgaagttagttattatggatatttgaagacacaaatatccagaag 252  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15542190 ctgaagtgaggaacctgaagttagttattatggatatttgaagacacaaatatgcagaag 15542131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 20462281 - 20462039
Alignment:
Q  14 agactaaaatttat--gtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctg 111  Q
    ||||||||||||||  |||||||||  | ||||| ||| ||||| ||||||| | || ||| || ||| |||||||| |||||||||||||  || ||||    
T  20462281 agactaaaatttataagtcttaaaagaaggtatttgttctggaagaacaaatgagagaaaaagaatttacaagggaagcttagttgcaagtctgagtctg 20462182  T
Q  112 aagaagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaa 211  Q
    ||||  ||| ||||||||||| || |||||||||| ||||||||| | ||| || |||| ||  ||||| ||||| |||  || ||||||||||||||||    
T  20462181 aagacatcaaagtctgaagaccat-cagaagctgactgtcaaagtctaaagatctcccagagcctgaag-ttcattagagtctaaagtgaagaacctgaa 20462084  T
Q  212 gttagttattatggatatttgaagacacaaatatccagaaggaata 257  Q
    |||||  |  || ||| ||||||||||||| | | |||||||||||    
T  20462083 gttag-caaaattgatttttgaagacacaagtgtgcagaaggaata 20462039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 15477595 - 15477744
Alignment:
Q  18 taaaatttat--gtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaaga 115  Q
    ||||||||||  |||||||||| | ||||||||| ||||| ||||| ||| | ||||||| |||||||| ||| |||| |||||||| ||| ||||||||    
T  15477595 taaaatttataagtcttaaaacaaagtattggttctggaagaacaagttagaacaaaggaattttcaagagaagcttatttgcaagtcagagtctgaaga 15477694  T
Q  116 agtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttca 166  Q
    | | | ||||||||||| || || ||||||| ||||| ||| |||||||||    
T  15477695 aattaaagtctgaagaccat-cataagctgactgtcagagtctgaagttca 15477744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 133 - 245
Target Start/End: Complemental strand, 24619898 - 24619785
Alignment:
Q  133 tatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagttagttattatggata-ttt 231  Q
    |||||||||||| | ||||||||| ||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||    
T  24619898 tatccagaagcttactgtcaaagtctgaagttcacccagagtctgaagattcatcaaaagctgaagtgaagaacctgaagttagtttttatggatatttt 24619799  T
Q  232 gaagacacaaatat 245  Q
    ||||||||||||||    
T  24619798 gaagacacaaatat 24619785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 23087910 - 23087815
Alignment:
Q  149 gtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagttagttattatggatatttgaagacacaaatat 245  Q
    |||| ||| ||||||||||| | ||| ||||| ||||||||||||||||||  ||||||||| ||||| ||||||||||||||||||||||||||||    
T  23087910 gtcagagtttgaagttcaccgagagtctgaag-ttcatcagaagctgaagtatagaacctgatgttaggtattatggatatttgaagacacaaatat 23087815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 23088002 - 23087897
Alignment:
Q  25 tatgtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaagaagtcagagt 124  Q
    ||||||||||||| | ||||||||| ||||| | |||||||||| ||| || ||||||||| || ||||||  ||||| |||||||||||||||||||||    
T  23088002 tatgtcttaaaacaaagtattggttctggaagagcaaattatagtaaatgaattttcaaggaaagcttagtcacaagtcagaatctgaagaagtcagagt 23087903  T
Q  125 ctgaag 130  Q
     |||||    
T  23087902 ttgaag 23087897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 2940687 - 2940583
Alignment:
Q  42 tattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaagaagtcagagtctgaagactatccagaa 141  Q
    |||||||||||||| ||||| ||| ||||||||| ||||  || ||| |  |||||||||| ||||||||||  | |||||||||||||  |||||||||    
T  2940687 tattggttatggaagaacaatttagagcaaaggaatttttcagagaagccaagttgcaagtcagaatctgaaagaatcagagtctgaagtttatccagaa 2940588  T
Q  142 gctga 146  Q
    |||||    
T  2940587 gctga 2940583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 17526229 - 17526350
Alignment:
Q  41 gtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaagaagtcagagtctgaagactatccaga 140  Q
    ||||||||| ||||| ||||||| | ||||||    ||| |||| ||| ||||||||||||| ||| ||||||||  ||||||| ||||| | || ||||    
T  17526229 gtattggttctggaagaacaaatgagagcaaatttttttacaagagaagcttagttgcaagtcagagtctgaagacatcagagtttgaaggccat-caga 17526327  T
Q  141 agctgattgtcaaagtatgaagt 163  Q
    |||||||||||| ||| ||||||    
T  17526328 agctgattgtcagagtctgaagt 17526350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 10328228 - 10328282
Alignment:
Q  93 agttgcaagttagaatctgaagaagtcagagtctgaagactatccagaagctgat 147  Q
    |||||||||| ||||||| ||||||||||| ||||| ||||| ||||||| ||||    
T  10328228 agttgcaagtcagaatctaaagaagtcagactctgatgactacccagaagttgat 10328282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 17526344 - 17526372
Alignment:
Q  193 ctgaagtgaagaacctgaagttagttatt 221  Q
    |||||||||||||||||||||||||||||    
T  17526344 ctgaagtgaagaacctgaagttagttatt 17526372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 8428 - 8280
Alignment:
Q  16 actaaaatttat--gtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaa 113  Q
    ||||||||||||  |||||||||| | ||||||||| || || ||||||| | |||||| || ||| ||| |||| ||||||||||||| ||||||||||    
T  8428 actaaaatttataagtcttaaaacaaggtattggttctgaaagaacaaatgagagcaaaagaatttacaacggaagcttagttgcaagtaagaatctgaa 8329  T
Q  114 gaagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagt 163  Q
    |   ||||||||||||||| || ||||||||||  |||| ||||||||||    
T  8328 gtcatcagagtctgaagaccat-cagaagctgacagtcagagtatgaagt 8280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 105211 - 104972
Alignment:
Q  14 agactaaaatttat--gtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctg 111  Q
    ||||||||||||||  |||||||| | | ||||||||| ||  ||||||||| | |||||| || ||| |||| ||| ||||||||||| | |||| ||     
T  105211 agactaaaatttatatgtcttaaagcaaagtattggttttgatataacaaatgagagcaaaagaattt-caagagaagcttagttgcaaatcagaaacta 105113  T
Q  112 aagaagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaa 211  Q
    ||||||||| | |||||||  |||| ||||||||| | | | | | ||||||||||| | ||| |||||||| |||| ||||| |||| ||  ||| |||    
T  105112 aagaagtcaaaatctgaagtttatctagaagctgactattagaatctgaagttcacctagagtctgaagatttatcaaaagct-aagttaaagacccgaa 105014  T
Q  212 gttagttattatggatatttgaagacacaaatatccagaagg 253  Q
    |||||||||  ||| |||||||||||||||| || |||||||    
T  105013 gttagttatattggttatttgaagacacaaagatgcagaagg 104972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 253
Target Start/End: Complemental strand, 25399641 - 25399503
Alignment:
Q  115 aagtcagagtctgaagactatccagaagctgattg-tcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagt 213  Q
    ||||||||||||||||| || | |||||||||||| ||| ||| | ||| ||||||| | | ||||| || || ||||||||||||||||| ||| ||||    
T  25399641 aagtcagagtctgaagattacctagaagctgattgatcagagtctaaagatcacccagaatctgaagttt-attagaagctgaagtgaagaccctaaagt 25399543  T
Q  214 tagttattatggatatttgaagacacaaatatccagaagg 253  Q
     ||||||||||| |||||||||||||| | || |||||||    
T  25399542 cagttattatggttatttgaagacacagagatgcagaagg 25399503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 31359567 - 31359463
Alignment:
Q  115 aagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagtt 214  Q
    |||||||||||||||||| ||  ||||||||| ||||| ||| ||||| ||||||| ||| ||||| ||||| |||  ||||||||||||||||||||||    
T  31359567 aagtcagagtctgaagaccatt-agaagctgactgtcagagtctgaagatcacccagagtctgaag-ttcattagagtctgaagtgaagaacctgaagtt 31359470  T
Q  215 agttatt 221  Q
    |||||||    
T  31359469 agttatt 31359463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 22640539 - 22640429
Alignment:
Q  93 agttgcaagttagaatctgaagaagtcagagtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaag 192  Q
    |||||||||||||| | ||||| ||||||||| |||| |||||| ||||||||||||||| ||| |||||||||| || ||| | ||  ||||||| |||    
T  22640539 agttgcaagttagagtttgaaggagtcagagtttgaatactatcaagaagctgattgtcagagtctgaagttcactcagagtct-aaatttcatcaaaag 22640441  T
Q  193 ctgaagtgaaga 204  Q
    ||||| ||||||    
T  22640440 ctgaattgaaga 22640429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 10154389 - 10154290
Alignment:
Q  123 gtctgaagactatccagaagctgattgtcaaagtatgaagttcacccaaagtttgaagattcatcagaagctgaagtgaagaacctgaagttagttatta 222  Q
    ||||||||||| || ||||||||| || || |||||||||||||||||| || ||||| || ||||| |||||| ||||||| | |||||| ||||||||    
T  10154389 gtctgaagactttctagaagctgaatgccagagtatgaagttcacccaaggtctgaag-tttatcagtagctgatgtgaagaccttgaagtcagttatta 10154291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 31359624 - 31359564
Alignment:
Q  42 tattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagt 102  Q
    |||||||||||||| ||| ||| | |||||| || |||||||| |||||||||||||||||    
T  31359624 tattggttatggaagaacgaatgagagcaaaagatttttcaagagaaacttagttgcaagt 31359564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 25399728 - 25399638
Alignment:
Q  14 agactaaaatttat--gtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagt 102  Q
    ||||||||||||||  |||||||||| | ||||||||| |  || ||||||||| |||||| || |||||||| ||| | |||||||||||    
T  25399728 agactaaaatttatatgtcttaaaacaaagtattggttctataagaacaaattagagcaaatgaattttcaagagaagcctagttgcaagt 25399638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 21616988 - 21616932
Alignment:
Q  77 ttttcaagggaaacttagttgcaagttagaatctgaagaagtcagagtctgaagacta 134  Q
    |||||||| |||||| |||| ||||| ||||||||||||||||||| ||||| |||||    
T  21616988 ttttcaagagaaactaagtt-caagtcagaatctgaagaagtcagactctgatgacta 21616932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 173668 - 173569
Alignment:
Q  43 attggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaagaagtcagagtctgaagactatccagaag 142  Q
    ||||||||||||| ||||| ||| |||||||   |||||||| ||||   |||||||||| ||||||||||||||||||||||| |||  ||||||||||    
T  173668 attggttatggaagaacaatttagagcaaagatattttcaagagaaatcaagttgcaagtcagaatctgaagaagtcagagtctcaagtttatccagaag 173569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 26118400 - 26118514
Alignment:
Q  14 agactaaaatttat--gtcttaaaaccatgtattggttatggaataacaaattatagcaaaggagttttcaagggaaacttagttgcaagttagaatctg 111  Q
    ||||||||||||||  |||||||||| | ||||||||| ||||| ||||| ||| |||||| || ||||||||  || |  |||||||||| | ||||||    
T  26118400 agactaaaatttatatgtcttaaaacaaagtattggttctggaagaacaatttagagcaaaagaattttcaagaaaagccaagttgcaagtcataatctg 26118499  T
Q  112 aagaagtcagagtct 126  Q
    |||||||||||||||    
T  26118500 aagaagtcagagtct 26118514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 12079178 - 12079079
Alignment:
Q  41 gtattggttatggaataacaaat-tatagcaaaggagttttcaagggaaacttagttgcaagttagaatctgaagaagtcagagtctgaagactatccag 139  Q
    |||||||||||| |  ||||||| || ||||||| | |||||||| ||| ||  ||||||||  ||||||||||||||||| | ||||||||||| ||||    
T  12079178 gtattggttatgaatgaacaaatctagagcaaagaa-ttttcaagagaagctatgttgcaagccagaatctgaagaagtcaaactctgaagactacccag 12079080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 5768 - 5716
Alignment:
Q  93 agttgcaagttagaatctgaagaagtcagagtctgaagactatccagaagctg 145  Q
    |||||||||| | ||||||||||||||||| |||||  |||||||| ||||||    
T  5768 agttgcaagtcaaaatctgaagaagtcagactctgattactatccataagctg 5716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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